Job Description P32152 Confidence 62.28% Date Thu Jan 5 11:49:32 GMT 2012 Rank 489 Aligned Residues 95 % Identity 16% Template c1c9bI_ PDB info PDB header:transcription/dna Chain: I: PDB Molecule:general transcription factor iib; PDBTitle: crystal structure of a human tbp core domain-human tfiib2 core domain complex bound to an extended, modified3 adenoviral major late promoter (admlp) Resolution 2.65 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.							.	.	.	.	.	.	80
Predicted Secondary structure																																																													.	.	.	.	.	.								.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.								.	.	.	.	.	.	.	.
Query Sequence		Q	Q	P	R	T	P	G	E	L	A	Q	Q	T	G	V	S	G	R	T	I	L	R	D	I	D	Y	L	N	F	T	L	N	G	K	A	R	I	F	A	S	G	S	A	G	Y	Q	L	E	I	F	E	R	R	S	F	F	Q	L	L	.	.	.	.	.	.	Q	K	H	D	N	D	D	.	.	.	.	.	.	.	.
Query Conservation																																																													.	.	.	.	.	.								.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	P	R	T	F	K	E	I	C	A	V	S	R	I	S	K	K	E	I	G	R	C	F	K	L	I	L	K	A	L	.	.	.	.	.	.	.	.	.	.	.	.	E	T	S	V	D	L	I	T	T	G	D	F	M	S	R	F	C	S	N	L	C	L	P	K	Q	V	Q	M	A	A	T	H	I	A	R	K	A
Template Known Secondary structure		T											T	S	S	S																T	.	.	.	.	.	.	.	.	.	.	.	.	T								T											T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.													.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
																				81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	L	A	L	L	L	L	N	T	F	T	P	R	A	Q	L	A	S	A	L	N	L	P	E	T	W	V	A	E	R	L	P	R	L	K	Q	R	Y	E	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	L	D	L	V	P	G	R	S	P	I	S	V	A	A	A	A	I	Y	M	A	S	Q	A	S	A	E	K	R	T	Q	K	E	I	G	D	I	A	G	V	A	D	V	T	I	R	Q	S	Y	R	L	I	Y	P	R	A	P	D
Template Known Secondary structure				T	T		S	T	T																		S	S	S												T														G	G	G
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions