Job Description P0AFI0 Confidence 30.85% Date Thu Jan 5 11:26:22 GMT 2012 Rank 248 Aligned Residues 121 % Identity 12% Template c3iz6A_ PDB info PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

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		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.				.	.	270	.	.	.
Predicted Secondary structure																		.	.																																																						.	.	.
Query SS confidence																		.	.																																																						.	.	.
Query Sequence		K	S	V	T	S	A	I	S	L	L	A	K	A	E	R	P	.	.	L	I	I	L	G	K	G	A	A	Y	S	Q	A	D	E	Q	L	R	E	F	I	E	S	A	Q	I	P	F	L	P	M	S	M	A	K	G	I	L	E	D	T	H	P	L	S	A	A	A	A	R	S	F	A	.	.	.	L	A	N	A	D	V
Query Conservation																		.	.																																																						.	.	.
Alig confidence																		.	.						.	.	.																							.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation																									.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	L	Q	L	A	A	R	V	I	V	A	I	E	N	P	Q	D	I	I	V	Q	S	.	.	.	A	R	P	Y	G	Q	R	A	V	L	K	F	A	Q	Y	T	G	A	H	A	I	A	.	.	.	.	.	.	.	.	.	.	.	G	R	H	T	P	G	T	F	T	N	Q	L	Q	T	S	F	S	E	P	R	L
Template Known Secondary structure														T	T	S	S								.	.	.		S															T						.	.	.	.	.	.	.	.	.	.	.	S				T	T	T	T	T	T	T	T	T	S		S	S			S
Template Predicted Secondary structure																									.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.				.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.												.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		V	M	L	V	G	A	R	L	N	W	L	.	L	A	H	G	K	K	G	W	A	A	D	T	Q	F	I	Q	L	D	I	E	P	Q	E	I	D	S	N	R	P	I	A	V	P	V	V	G	D	I	A	S	S	M	Q	G	M	L	A	E	L
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		L	I	L	T	D	P	R	T	D	H	Q	P	I	K	E	S	A	L	G	N	I	P	T	I	A	F	C	D	T	D	S	P	M	R	Y	V	D	I	G	I	P	A	N	N	K	G	K	Q	S	I	G	C	L	F	W	L	L	A	R	M	V
Template Known Secondary structure					S		T	T	T	T											T									T	T	S		G	G	G		S					S			S	S	T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions