Job Description P0AFI0 Confidence 96.44% Date Thu Jan 5 11:26:22 GMT 2012 Rank 112 Aligned Residues 224 % Identity 12% Template c3dufD_ PDB info PDB header:oxidoreductase/transferase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component subunit beta; PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex Resolution 2.50 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																				.	.	.	.																	.									.
Query SS confidence																				.	.	.	.																	.									.
Query Sequence		M	H	I	I	V	E	A	L	K	Q	N	N	I	D	T	I	Y	G	.	.	.	.	V	V	G	I	P	V	T	D	M	A	R	H	A	Q	A	E	.	G	I	R	Y	I	G	F	R	.	H	E	Q	S	A	G	Y	A	A	A	A	S	G	F	L	T	Q	K	P	G	I	C	L	T	V	S	A	P	G	F	L	N
Query Conservation																				.	.	.	.																	.									.
Alig confidence																				.	.	.	.																	.									.																				.
Template Conservation																																																																					.
Template Sequence		T	D	A	L	R	I	E	L	K	N	D	P	N	V	L	I	F	G	E	D	V	G	V	N	G	G	V	F	R	A	T	E	G	L	Q	A	E	F	G	E	D	R	V	F	D	T	P	L	A	E	S	G	I	G	G	L	A	I	G	L	A	L	Q	G	F	R	P	.	V	P	E	I	Q	F	F	G	F	V	Y	E
Template Known Secondary structure													T	T						T	T		S	T	T			T	T	S	T	T	T	T							T	T	T						S															T	T				.					S	S	G	G	G	G	G	G
Template Predicted Secondary structure																																																																					.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.										.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																					.
Query SS confidence												.	.	.	.	.	.	.	.	.																																					.
Query Sequence		G	L	T	A	L	A	N	A	T	V	.	.	.	.	.	.	.	.	.	N	G	F	P	M	I	M	I	S	G	S	S	D	R	A	I	V	D	L	Q	Q	G	D	Y	E	E	L	D	Q	M	N	A	A	K	P	Y	.	A	K	A	A	F	R	V	N	Q	P	Q	D	L	G	I	A	L	A	R	A	I	R	V	S
Query Conservation												.	.	.	.	.	.	.	.	.																																					.
Alig confidence												.	.	.	.	.	.	.	.	.														.	.	.	.																				.																							.	.
Template Conservation																																		.	.	.	.																																											.	.
Template Sequence		V	M	D	S	I	C	G	Q	M	A	R	I	R	Y	R	T	G	G	R	Y	H	M	P	I	T	I	R	S	P	F	G	G	.	.	.	.	G	V	H	T	P	E	L	H	S	D	S	L	E	G	L	V	A	Q	Q	P	G	L	K	V	V	I	P	S	T	P	Y	D	A	K	G	L	L	I	S	A	I	R	.	.
Template Known Secondary structure		G							T	T	T	T					T	T	T	S	S													.	.	.	.	S	S				T	T	S	S								T	T	S	T	T								S														.	.
Template Predicted Secondary structure																																		.	.	.	.																																											.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.											.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	G	R	P	G	G	V	Y	L	D	L	P	A	N	V	L	A	A	T	M	E	K	D	E	A	L	T	T	I	V	K	V	E	N	P	S	P	A	L	L	P	C	P	.	.	.	.	.	.	.	.	.	.	K	S	V	T	S	A	I	S	L	L	A	K	A	E	R	P	L	I	I	L	G	K	G	A	A	Y
Query Conservation																																														.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																										.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	D	N	D	P	V	I	F	L	E	H	L	K	L	Y	R	S	F	R	Q	E	V	P	E	G	E	Y	T	I	P	I	G	K	A	D	I	K	R	E	G	K	D	I	T	I	I	A	Y	G	A	M	V	H	E	S	L	K	A	A	A	E	L	E	K	E	G	I	S	A	E	V	V	D	L	R	T	V	Q
Template Known Secondary structure		.	.	.	S	S	S								T	T	T	T	T	S							S	S						T	T									S	S							T	T														T	T	T									S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	A	D	E	Q	L	R	E	F	I	E	S	A	Q	I	P	F	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	D	I	E	T	I	I	G	S	V	E	K	T	G	R	A	I	V	V
Template Known Secondary structure		S														S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions