Job Description P0AFI0 Confidence 100.00% Date Thu Jan 5 11:26:22 GMT 2012 Rank 13 Aligned Residues 535 % Identity 15% Template c2x7jA_ PDB info PDB header:transferase Chain: A: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene PDBTitle: structure of the menaquinone biosynthesis protein mend from2 bacillus subtilis Resolution 2.35 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		M	S	D	Q	L	Q	M	T	D	G	M	H	I	I	V	E	A	L	K	Q	N	N	I	D	T	I	Y	G	V	V	G	I	P	V	T	D	M	A	R	H	A	Q	A	E	.	G	I	R	Y	I	G	F	R	H	E	Q	S	A	G	Y	A	A	A	A	S	G	F	L	T	Q	K	P	G	I	C	L	T	V	S	A
Query Conservation																																														.
Alig confidence				.	.	.																																								.
Template Conservation				.	.	.
Template Sequence		V	N	.	.	.	P	I	T	H	Y	I	G	S	F	I	D	E	F	A	L	S	G	I	T	D	A	V	V	C	P	G	S	R	S	T	P	L	A	V	L	C	A	A	H	P	D	I	S	V	H	V	Q	I	D	E	R	S	A	G	F	F	A	L	G	L	A	K	A	K	Q	R	P	V	L	L	I	C	T	S	G
Template Known Secondary structure				.	.	.																	T										S	T	T											T	T							S	S																T	S								S	S
Template Predicted Secondary structure				.	.	.
Template SS confidence
		3	.				.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.								.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.
Query Sequence		P	G	F	L	N	G	L	T	A	L	A	N	A	T	V	N	G	F	P	M	I	M	I	S	G	S	S	D	R	A	I	V	D	L	Q	Q	G	D	Y	E	E	L	D	Q	M	N	A	A	K	P	Y	A	K	A	A	F	R	V	.	.	.	.	.	.	.	N	Q	P	Q	D	L	G	I	A	L	A	R	A	I	R
Query Conservation																																																												.	.	.	.	.	.	.
Alig confidence																																			.	.																								.	.	.	.	.	.	.
Template Conservation																																			.	.
Template Sequence		T	A	A	A	N	F	Y	P	A	V	V	E	A	H	Y	S	R	V	P	I	I	V	L	T	A	D	R	P	H	E	L	R	E	.	.	V	G	A	P	Q	A	I	N	Q	H	F	L	F	G	N	F	V	K	F	F	T	D	S	A	L	P	E	E	S	P	Q	M	L	R	Y	I	R	T	L	A	S	R	A	A	G
Template Known Secondary structure						T	T											T												G	G	G	S	S	.	.	S			T	T					T	T	T	T	G	G	G	S	S											S
Template Predicted Secondary structure																																			.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.
Query SS confidence																																							.	.	.
Query Sequence		V	S	V	S	G	R	P	G	G	V	Y	L	D	L	P	A	N	V	L	A	A	T	M	E	K	D	E	A	L	T	T	I	V	K	V	E	N	.	.	.	P	S	P	A	L	L	P	C	P	K	S	V	T	S	A	I	S	L	L	A	K	A	E	R	P	L	I	I	L	G	K	G	A	A	Y	S	Q	A	D	E
Query Conservation																																							.	.	.
Alig confidence																																							.	.	.																																							.
Template Conservation																																																																																.
Template Sequence		E	A	Q	K	R	P	M	G	P	V	H	V	N	V	P	L	R	E	P	L	M	P	D	L	S	D	E	P	F	G	R	M	R	T	G	R	H	V	S	V	K	T	G	T	Q	S	V	D	R	E	S	L	S	D	V	A	E	M	L	A	E	A	E	K	G	M	I	V	C	G	E	L	H	S	D	A	D	K	.	E
Template Known Secondary structure					S	S	S												S						T	T	S		T	T			S	S	S	S		S	S											T	G	G	G											S	S															.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.								.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																					.																	.	.	.	.	.	.	.
Query SS confidence																					.																	.	.	.	.	.	.	.
Query Sequence		Q	L	R	E	F	I	E	S	A	Q	I	P	F	L	P	M	S	M	A	.	K	G	I	L	E	D	T	H	P	L	S	A	A	A	A	R	.	.	.	.	.	.	.	S	F	A	L	A	N	A	D	V	V	M	L	V	G	A	R	L	N	W	L	L	A	H	G	K	K	G	W	A	A	D	T	Q	F	I	Q	L
Query Conservation																					.																	.	.	.	.	.	.	.
Alig confidence																					.																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	I	A	L	S	K	A	L	Q	Y	P	I	L	A	D	P	L	S	N	L	R	N	G	V	H	D	K	S	T	V	I	D	A	Y	D	S	F	L	K	D	D	E	L	K	R	K	L	R	P	D	V	V	I	R	F	G	P	M	P	V	S	K	P	V	F	L	W	L	K	D	D	P	T	I	Q	Q	I	V	I
Template Known Secondary structure											T							G	G	G	T	T	T	B	S	S	S			T	T									T	T	S										S						S	S			S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	E	P	Q	E	I	D	S	N	R	P	I	A	V	P	V	V	G	D	I	A	S	S	M	Q	G	M	L	A	E	L	K	Q	N	T	F	T	T	P	L	V	W	R	D	I	L	N	I	H	K	Q	Q	N	A	Q	K	M	H	E	K	L	S	T	D	T	Q	P	L	N	Y	F	N	A	L	S	A	V	R	D
Query Conservation
Alig confidence																																				.	.																											.	.
Template Conservation																																				.	.																											.	.
Template Sequence		D	E	D	G	G	W	R	D	P	T	Q	A	S	A	H	M	I	H	C	N	A	S	V	F	A	E	E	I	M	A	G	L	T	A	.	.	A	T	R	S	S	E	W	L	E	K	W	Q	F	V	N	G	R	F	R	E	H	L	Q	T	I	S	.	.	S	E	D	V	S	F	E	G	N	L	Y	R	I	L	Q	H
Template Known Secondary structure			T	T						T	T	S			S					S												T	S		S	.	.	S																							T	S		.	.				T	T	S
Template Predicted Secondary structure																																				.	.																											.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.			.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	R	E	N	Q	D	I	Y	L	V	N	E	G	A	N	T	L	D	N	A	R	N	I	I	D	M	Y	K	P	R	R	R	L	D	C	G	T	W	G	V	M	G	I	G	M	G	Y	A	I	G	A	S	V	T	S	G	S	P	V	V	A	I	E	G	D	S	A	F	G	F	S	G	M	E	I	E	T	I	C
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		L	V	P	E	N	.	S	S	L	F	V	G	N	S	M	P	I	R	D	V	D	T	F	F	E	K	Q	D	R	P	F	R	I	Y	S	N	R	G	A	N	G	I	D	G	V	V	S	S	A	M	G	V	C	E	G	T	K	A	P	V	T	L	V	I	G	D	L	S	F	Y	H	D	L	N	G	L	L	A	A	K
Template Known Secondary structure			S		T	T	.							T	T													B	S									T	T	T			S	S	S													T	S														T	G	G	G	G
Template Predicted Secondary structure							.
Template SS confidence
		393	.	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.			.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		R	Y	N	L	P	V	T	I	V	I	F	N	N	G	G	I	Y	R	G	D	G	V	D	L	S	G	A	.	.	G	A	P	S	P	T	D	L	L	H	H	A	R	Y	D	K	L	M	D	A	F	R	G	V	G	Y	N	V	T	T	T	D	E	L	R	H	A	L	T	T	G	I	Q	S	R	K	P	T	I	I	N
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		K	L	G	I	P	L	T	V	I	L	V	N	N	D	G	G	G	I	F	S	F	L	P	Q	A	S	E	K	T	H	F	E	D	L	F	G	T	P	T	G	L	D	F	K	H	A	A	A	L	Y	G	G	T	Y	S	C	P	A	S	W	D	E	F	K	T	A	Y	A	P	Q	A	D	K	P	G	L	H	L	I	E
Template Known Secondary structure															S	S		G	G	G	G	G	S	G	G	G	S									T	T							T							T	T							S	S													S	S
Template Predicted Secondary structure
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
		540	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	I	D	P	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	T	D	R	Q	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		552	.	.	.	.	.	.