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Job DescriptionP0AFI0
Confidence100.00%DateThu Jan 5 11:26:22 GMT 2012
Rank7Aligned Residues537
% Identity23%Templatec2panF_
PDB info PDB header:lyaseChain: F: PDB Molecule:glyoxylate carboligase; PDBTitle: crystal structure of e. coli glyoxylate carboligase
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40.... .....50.........60........ .70.........80.....
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Query Sequence  TDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAE. GIRYIGFRHEQSAGYAAAASGFLT. QKPGICLTVSAPGFLNG
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Template Sequence  XRAVDAAXYVLEKEGITTAFGVPGAAINPFYSAXRKHGGIRHILARHVEGASHXAEGYTRATAGNIGVCLGTSGPAGTDX
Template Known Secondary structure  TT




GGG



SSSTT


STTS
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  LTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLD
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Template Sequence  ITALYSASADSIPILCITG. . QAPRARLHKEDFQAVDIEAIAKPVSKXAVTVREAALVPRVLQQAFHLXRSGRPGPVLVD
Template Known Secondary structure  TT

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GGGTTTT
TT


GGGSS

SGGGSSS


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   84.....90.........100.. .......110.........120.........130.........140.........150.........160.
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  LPANVLAATMEKDEALTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPM
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Template Sequence  LPFDVQVAEIEF. . . . DPDXYEPLPVYKPAASRXQIEKAVEXLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPT
Template Known Secondary structure  S
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GGG











T
SS
TT
T


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   162.......170... ......180.........190.........200.........210.........220.........230.......
 
   246...250.........260. ........270.........280.........290.........300.........310.......
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Query Sequence  SMAKGILEDTHPLSAA. . . . . . . . AARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVP
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Template Sequence  LXGWGCIPDDHELXAGXVGLQTAHRYGNATLLASDXVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLG
Template Known Secondary structure  TTTTTSS
TTSTTB



SSSS


SS



SSTT
S
GGGTTSSS

SS
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   238.240.........250.........260.........270.........280.........290.........300.........310.......
 
   318.320.........330.........340.........350.........360.........370.........380.........390.......
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Query Sequence  VVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGAN
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Template Sequence  IVSDAKAALTLLVEVAQEXQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEXNKAFGRD. VCYVTTIGLS
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TT
S


TTS





SSB
S
TT.
SS
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   318.320.........330.........340.........350.........360.........370.........380...... ...390......
 
   398.400.........410.........420.........430...... ...440.........450.........460.........470......
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Query Sequence  TLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT. SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIFNNGG
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Template Sequence  QIAAAQ. XLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHVLVNNAY
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STTS
TTT

TT

TT
TGGGTT



SB
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   397..400.. .......410.........420.........430.........440.........450.........460.........470.....
 
   477..480........ .490.........500.........510.........520.........530. ........540..
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Query Sequence  IYRGDGVDLSGA. . . . . . . . . . GAPSPTDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQ. . . . SRKPTIINVVI
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Template Sequence  LGLIRQSQRAFDXDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALXAQYRVPVVVEVIL
Template Known Secondary structure 
GGGGT


S
B




TT
STTTT



TT

SGGG
S
B
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   476...480.........490.........500.........510.........520.........530.........540.........550.....
 
   543......550..
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Query Sequence  DPAAGTESGH
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Template Conservation 
         
Template Sequence  ERVTNISXGS
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S




B
S
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   556...560.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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