Job Description P0AFI0 Confidence 100.00% Date Thu Jan 5 11:26:22 GMT 2012 Rank 19 Aligned Residues 521 % Identity 14% Template c2jlaD_ PDB info PDB header:transferase Chain: D: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene PDBTitle: crystal structure of e.coli mend, 2-succinyl-5-enolpyruvyl-2 6-hydroxy-3-cyclohexadiene-1-carboxylate synthase - semet3 protein Resolution 2.81 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		D	G	M	H	I	I	V	E	A	L	K	Q	N	N	I	D	T	I	Y	G	V	V	G	I	P	V	T	D	M	A	R	H	A	Q	A	E	.	G	I	R	Y	I	G	F	R	H	E	Q	S	A	G	Y	A	A	A	A	S	G	F	L	T	Q	K	P	G	I	C	L	T	V	S	A	P	G	F	L	N	G	L	T
Query Conservation																																						.
Alig confidence																																						.
Template Conservation
Template Sequence		R	W	A	A	V	I	L	E	A	L	T	R	H	G	V	R	H	I	C	I	A	P	G	S	R	S	T	P	L	T	L	A	A	A	E	N	S	A	F	I	H	H	T	H	F	D	E	R	G	L	G	H	L	A	L	G	L	A	K	V	S	K	Q	P	V	A	V	I	V	T	S	G	T	A	V	A	N	L	Y	P
Template Known Secondary structure													T	T	T										S	T	T											T	T							S																		S								S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		A	L	A	N	A	T	V	N	G	F	P	M	I	M	I	S	G	S	S	D	R	A	I	V	D	L	Q	Q	G	D	Y	E	E	L	D	Q	M	N	A	A	K	P	Y	A	K	A	A	F	R	V	N	Q	P	Q	D	.	.	.	L	G	I	A	L	A	R	A	I	R	V	S	V	S	G	R	P	G	G	V	Y	L
Query Conservation																																																									.	.	.
Alig confidence																			.	.																																					.	.	.
Template Conservation																			.	.
Template Sequence		A	L	I	E	A	G	L	T	G	E	K	L	I	L	L	T	A	.	.	D	R	P	P	E	L	I	D	C	G	A	N	Q	A	I	R	Q	P	G	X	F	A	S	H	P	T	H	S	I	S	L	P	R	P	T	Q	D	I	P	A	R	W	L	V	S	T	I	D	H	A	L	G	T	L	H	A	G	G	V	H	I
Template Known Secondary structure																			.	.				G	G	G	S	S	S	S		T	T					T	T	T	T	T	T		S	S										T	T	S															T			S	S
Template Predicted Secondary structure																			.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.							.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.
Query Sequence		D	L	P	A	N	V	L	A	A	T	M	.	.	.	.	.	.	E	K	D	E	A	L	T	T	I	V	K	V	E	N	P	S	P	A	L	L	P	C	P	K	S	V	T	S	A	I	S	L	L	A	K	A	E	R	P	L	I	I	L	G	K	G	A	A	Y	S	Q	A	D	E	Q	L	R	E	F	I	E	S	A
Query Conservation													.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.																																																.	.
Template Conservation																																																																		.	.
Template Sequence		N	C	P	F	A	E	P	L	Y	G	E	X	D	D	T	G	L	S	W	Q	Q	R	L	G	D	W	W	Q	D	D	K	P	W	L	R	E	A	P	R	L	E	S	E	K	Q	R	D	W	F	F	W	R	Q	K	R	G	V	V	V	A	G	R	X	S	.	.	A	E	E	G	K	K	V	A	L	W	A	Q	T	L
Template Known Secondary structure							S				S					T	T						T	T	G	G	G	G	G		S	S		S	S												T	T					T	T	S								S			.	.
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		Q	I	P	F	L	P	M	S	M	A	K	G	I	L	E	D	T	H	P	L	S	A	A	.	.	A	A	R	S	F	A	L	A	N	A	D	V	V	M	L	V	G	A	R	L	N	W	L	L	A	H	G	K	K	G	W	A	A	D	T	Q	F	I	Q	L	D	I	E	P	Q	E	I	D	S	N	R	P	I	A	V
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		G	W	P	L	I	G	D	V	L	S	Q	T	G	Q	P	L	P	C	A	D	L	W	L	G	N	A	K	A	T	S	E	L	Q	Q	A	Q	I	V	V	Q	L	G	S	S	L	T	G	K	R	L	L	Q	W	Q	A	S	C	E	P	E	E	Y	W	I	V	D	D	I	E	G	R	L	D	P	A	H	H	R	G	R
Template Known Secondary structure		T							T	T	T		S			S	S							T	T	S								T	T		S						S																		S							S	S		S				T	T			S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	V	G	D	I	A	S	S	M	Q	G	M	L	A	E	L	K	Q	N	T	F	T	T	P	L	V	W	R	D	I	L	N	I	H	K	Q	Q	N	A	Q	K	M	H	E	K	L	S	T	D	T	Q	P	L	N	Y	F	N	A	L	S	A	V	R	D	V	L	R	E	N	Q	D	I	Y	L	V	N	E	G	A
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Sequence		R	L	I	A	N	I	A	D	W	L	E	L	H	P	A	E	K	R	Q	P	W	C	V	E	I	P	R	L	A	E	Q	A	X	Q	A	V	.	.	.	.	.	.	.	.	.	.	.	I	A	R	R	D	A	F	G	E	A	Q	L	A	H	R	I	C	D	Y	L	P	E	Q	G	Q	L	F	V	.	.	G	N	S
Template Known Secondary structure					S									S										S	S													.	.	.	.	.	.	.	.	.	.	.			T			S		S							T	G	G	G	G			T	T						.	.		T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.																													.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360												.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.			.	390	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	L	D	N	A	R	N	I	I	D	M	Y	K	P	R	R	R	L	D	C	G	T	W	G	V	M	G	I	G	M	G	Y	A	I	G	A	S	V	T	S	G	S	P	V	V	A	I	E	G	D	S	A	F	G	F	S	G	M	E	I	E	T	I	C	R	Y	N	L	P	V	T	I	V	I	F	N	N	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	V	R	L	I	D	A	L	S	Q	L	P	A	G	Y	P	V	Y	S	N	R	G	A	S	G	I	D	G	L	L	S	T	A	A	G	V	Q	R	A	S	G	K	P	T	L	A	I	V	G	D	L	S	A	L	Y	D	L	N	A	L	A	L	L	R	Q	V	S	A	P	L	V	L	I	V	V	N	N	N	G
Template Known Secondary structure															T	T								S	S			S	S	S																												T	G	G	G	G	G	G	G	G			S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	R	G	D	G	V	D	L	S	G	A	G	A	P	S	P	T	D	L	L	H	H	A	R	Y	D	K	L	M	D	A	F	R	G	V	G	Y	N	V	T	T	T	D	E	L	R	H	A	L	T	T	G	I	Q	S	R	K	P	T	I	I	N	V	V	I	D	P	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	I	F	S	L	L	P	T	P	Q	S	E	R	E	R	F	Y	L	X	P	Q	N	V	H	F	E	H	A	A	A	X	F	E	L	K	Y	H	R	P	Q	N	W	Q	E	L	E	T	A	F	A	D	A	W	R	T	P	T	T	T	V	I	E	X	V	V	N	D	T	D
Template Known Secondary structure			T					T	T			G	G	G					T	T							S							T	T							S	S												T	T	S	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.