Job Description P0AFI0 Confidence 48.67% Date Thu Jan 5 11:26:22 GMT 2012 Rank 181 Aligned Residues 145 % Identity 12% Template c2d6fA_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) Resolution 3.15 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		C	L	T	V	S	A	P	G	F	L	N	G	L	T	A	L	A	N	.	A	T	V	N	G	F	P	M	I	M	I	S	G	S	S	D	R	A	I	V	D	L	Q	Q	G	D	Y	E	E	L	D	Q	M	N	A	A	K	P	Y	A	K	A	A	F	R	V	N	Q	P	Q	D	L	G	I	A	L	A	R	A	I	R
Query Conservation																				.
Alig confidence																				.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	V	A	H	G	T	D	T	M	H	Y	T	S	A	A	L	S	F	M	L	R	T	P	V	P	V	V	F	T	G	A	Q	R	S	S	D	R	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	A	S	L	N	I	Q	C	S	V	R
Template Known Secondary structure								T	T	T															S	S								S	S		T	T	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210																													.	.	.	.	.	.	.	.	.	220	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.								170	.	.	.																															.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	V	S	G	R	P	G	G	V	Y	L	D	L	P	A	N	.	.	.	.	.	.	.	V	L	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	M	E	K	D	E	A	L	T	T	I	V	K	V	E	N	P	S	P	A	L	L
Query Conservation																			.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.									.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		A	A	T	S	E	I	A	E	.	V	T	V	C	M	H	A	T	M	D	D	L	S	C	H	L	H	R	G	V	K	V	R	K	M	H	T	S	R	R	D	T	F	R	S	M	N	A	L	P	L	A	E	V	T	P	D	G	I	K	I	L	E	E	N	Y	R	K	R	G	S	D	E	L	E	L	S	D	R	V	E
Template Known Secondary structure					S	S			S	.							S	S	S	S	S	S							G	G	G					S	S	S		T	T					S	S	S			S					T	T												S	T	T	S
Template Predicted Secondary structure										.
Template SS confidence
		223	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		196	.	.	.	200	.									.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.																						.	.
Query SS confidence								.	.	.	.	.	.	.	.																						.	.
Query Sequence		P	C	P	K	S	V	.	.	.	.	.	.	.	.	T	S	A	I	S	L	L	A	K	A	E	R	P	L	I	I	L	G	K	G	A	.	.	A	Y	S	Q	A	D	E	Q	L	R	E	F	I	E	S	A	Q	I	P	F	L	P	M	S	M	A
Query Conservation								.	.	.	.	.	.	.	.																						.	.
Alig confidence								.	.	.	.	.	.	.	.																						.	.																.
Template Conservation																																																						.
Template Sequence		E	R	V	A	F	I	K	S	Y	P	G	I	S	P	D	I	I	K	W	H	L	D	E	G	Y	R	G	I	V	I	E	G	T	G	L	G	H	C	P	D	T	L	I	P	V	I	G	E	A	H	D	M	.	G	V	P	V	A	M	T	S	Q	C
Template Known Secondary structure											T	T												T	T		S							B	T	T	T	B			G	G	G										T	.	T								T	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions