Job Description P0AFI0 Confidence 100.00% Date Thu Jan 5 11:26:22 GMT 2012 Rank 16 Aligned Residues 519 % Identity 18% Template c1zpdA_ PDB info PDB header:alcohol fermentation Chain: A: PDB Molecule:pyruvate decarboxylase; PDBTitle: pyruvate decarboxylase from zymomonas mobilis Resolution 1.86 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		T	D	G	M	H	I	I	V	E	A	L	K	Q	N	N	I	D	T	I	Y	G	V	V	G	I	P	V	T	D	M	A	R	H	A	Q	A	.	E	G	I	R	Y	I	G	F	R	H	E	Q	S	A	G	Y	A	A	A	A	S	G	F	L	T	Q	K	P	G	I	C	L	T	V	S	A	P	G	F	L	N	G	L
Query Conservation																																						.
Alig confidence																																						.																																.
Template Conservation																																																																						.
Template Sequence		Y	T	V	G	T	Y	L	A	E	R	L	V	Q	I	G	L	K	H	H	F	A	V	A	G	D	Y	N	L	V	L	L	D	N	L	L	L	N	K	N	M	E	Q	V	Y	C	C	N	E	L	N	C	G	F	S	A	E	G	Y	A	R	A	K	G	A	A	A	A	V	.	V	T	Y	S	V	G	A	L	S	A	F
Template Known Secondary structure			B												T	T		S								T	T	T									T		T	T	S						S	S																S						.			T	T	T	T
Template Predicted Secondary structure																																																																						.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.							.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																															.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.
Query Sequence		T	A	L	A	N	A	T	V	N	G	F	P	M	I	M	I	S	G	S	S	D	R	A	I	V	D	L	Q	Q	.	.	.	.	.	.	G	D	Y	E	E	L	D	Q	M	N	A	A	K	P	Y	A	K	A	A	F	R	V	N	Q	P	Q	D	L	G	I	A	L	A	R	A	I	R	V	S	V	S	G	R	P	G
Query Conservation																															.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.																																												.
Template Conservation																																																																																.
Template Sequence		D	A	I	G	G	A	Y	A	E	N	L	P	V	I	L	I	S	G	A	P	N	N	N	D	H	A	A	G	H	V	L	H	H	A	L	G	K	T	D	Y	H	Y	Q	L	E	M	A	K	N	I	T	A	A	A	E	A	I	Y	T	P	E	E	A	P	A	K	I	D	H	V	I	K	T	A	L	R	E	K	.	K
Template Known Secondary structure										T	T												G	G	G	T	T	T	T				T	T	S		S	S	S										G	G	G		S							S	G	G	G																T	.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	Y	L	D	L	P	A	N	V	L	A	A	T	M	E	K	D	E	A	L	T	T	I	V	K	V	E	N	P	S	P	A	L	L	P	C	P	K	S	V	T	S	A	I	S	L	L	A	K	A	E	R	P	L	I	I	L	G	K	G	A	A	Y	S	Q	A	D	E	Q	L	R	E	F	I	E	S	A	Q	I
Query Conservation
Alig confidence																								.	.
Template Conservation																								.	.
Template Sequence		P	V	Y	L	E	I	A	C	N	I	A	S	M	P	C	A	A	P	G	P	A	S	.	.	A	L	F	N	D	E	A	S	D	E	A	S	L	N	A	A	V	D	E	T	L	K	F	I	A	N	R	D	K	V	A	V	L	V	G	S	K	L	R	A	A	G	A	E	E	A	A	V	K	F	T	D	A	L	G	G
Template Known Secondary structure									T	T	S	T	T	S	B							G	G	.	.	G	G	G																						T	T		S								T	T	T	T	T	T	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.									.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.
Query Sequence		P	F	L	P	M	S	M	A	K	G	I	L	E	D	T	H	P	L	S	A	A	A	A	.	.	.	.	.	.	.	.	R	S	F	A	L	A	N	A	D	V	V	M	L	V	G	A	R	L	N	W	L	L	A	H	G	K	K	G	W	A	A	D	T	Q	F	I	Q	L	D	I	E	P	Q	E	I	D	S	N	R
Query Conservation																									.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	A	T	M	A	A	A	K	S	F	F	P	E	E	N	A	L	Y	I	G	T	S	W	G	E	V	S	Y	P	G	V	E	K	T	M	K	E	A	D	A	V	I	A	L	A	P	V	F	N	D	Y	S	T	T	G	W	T	D	I	P	D	P	K	K	L	V	L	A	E	P	R	S	V	V	V	N	G	I	R
Template Known Secondary structure							G	G	G	T	T	S	S		T	T	S	T	T							G	G	G	S		T	T									S						S					T	T	T	T	T	T	T	T					G	G	G						S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	A	V	P	V	V	G	D	I	A	S	S	M	Q	G	M	L	A	E	L	K	Q	N	T	F	T	T	P	L	V	W	R	D	I	L	N	I	H	K	Q	Q	N	A	Q	K	M	H	E	K	L	S	T	D	T	Q	P	L	N	Y	F	N	A	L	S	A	V	R	D	V	L	R	E	N	Q	D	I	Y	L	V
Query Conservation
Alig confidence						.	.	.	.																		.	.	.	.	.	.	.																																											.
Template Conservation						.	.	.	.																		.	.	.	.	.	.	.																																											.
Template Sequence		F	P	S	V	.	.	.	.	H	L	K	D	Y	L	T	R	L	A	Q	K	V	S	K	K	T	.	.	.	.	.	.	.	G	S	L	D	F	F	K	S	L	N	A	G	E	L	K	K	A	A	P	A	D	P	S	A	P	L	V	N	A	E	I	A	R	Q	V	E	A	L	L	T	P	N	.	T	T	V	I	A
Template Known Secondary structure				S		.	.	.	.																		.	.	.	.	.	.	.									T				S									T	T	S	B													T			T	T	.
Template Predicted Secondary structure						.	.	.	.																		.	.	.	.	.	.	.																																											.
Template SS confidence
		319	320	.	.					.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.								340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.		.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		N	E	G	A	N	T	L	D	N	A	R	N	I	I	D	M	Y	K	P	R	R	R	L	D	C	G	T	W	G	V	M	G	I	G	M	G	Y	A	I	G	A	S	V	T	.	S	G	S	P	V	V	A	I	E	G	D	S	A	F	G	F	S	G	M	E	I	E	T	I	C	R	Y	N	L	P	V	T	I	V	I
Query Conservation																																														.
Alig confidence												.	.																																	.
Template Conservation												.	.
Template Sequence		E	T	G	D	S	W	F	N	A	Q	.	.	R	M	K	L	P	N	G	A	R	V	E	Y	E	M	Q	W	G	H	I	G	W	S	V	P	A	A	F	G	Y	A	V	G	A	P	E	R	R	N	I	L	M	V	G	D	G	S	F	Q	L	T	A	Q	E	V	A	Q	M	V	R	L	K	L	P	V	I	I	F	L
Template Known Secondary structure			S	S								.	.	T					T	T							T	T	T			T	T	T													T	T	S															G	G	G							T	T
Template Predicted Secondary structure												.	.
Template SS confidence
		387	.	.	390	.	.	.	.	.	.			.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510										.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.		.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.																						.
Query SS confidence																																									.	.	.	.	.	.	.	.	.																						.
Query Sequence		F	N	N	G	G	I	Y	R	G	D	G	V	D	L	S	G	A	G	A	P	S	P	T	D	L	L	H	H	A	R	Y	D	K	L	M	D	A	F	R	.	.	.	.	.	.	.	.	.	G	V	G	Y	N	V	T	T	T	D	E	L	R	H	A	L	T	T	G	I	Q	.	S	R	K	P	T	I	I	N	V	V
Query Conservation																																									.	.	.	.	.	.	.	.	.																						.
Alig confidence																			.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																						.
Template Conservation																			.	.	.	.	.	.
Template Sequence		I	N	N	Y	G	Y	T	I	E	V	M	I	H	D	G	P	Y	.	.	.	.	.	.	N	N	I	K	N	W	D	Y	A	G	L	M	E	V	F	N	G	N	G	G	Y	D	S	G	A	A	K	G	L	K	A	K	T	G	G	E	L	A	E	A	I	K	V	A	L	A	N	T	D	G	P	T	L	I	E	C	F
Template Known Secondary structure					S	S						T	T	S			G	G	.	.	.	.	.	.	G																	T	T	S	S	S										S	B																S	S
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.							.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
		542	.	.	.	.	.	.	.	550
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	P	A	A	G	T	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	R	E	D	C	T	E	E
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		539	540	.	.	.	.	.	.	.