Job Description P0AFI0 Confidence 96.57% Date Thu Jan 5 11:26:22 GMT 2012 Rank 111 Aligned Residues 136 % Identity 16% Template c1pt9B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue Resolution 2.42 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	S	A	I	S	L	L	A	K	A	E	R	P	L	I	I	L	G	K	G	A	A	Y	S	Q	A	D	E	Q	L	R	E	F	I	E	S	A	Q	I	P	F	L	P	M	S	M	A	K	G	I	L	E	D	T	H	P	L	S	A	A	A	A	R	S	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	N	A	I	D	M	I	R	E	A	N	S	I	I	I	T	P	G	Y	G	L	C	A	A	K	A	Q	Y	P	I	A	D	L	V	K	M	L	T	E	Q	G	K	K	V	R	F	G	I	H	P	V	A	G	R	M	P	G	Q	L	N	V	L	L	A	E	A	G	V	P	Y	D	I	V	L	E	M	D	E	I
Template Known Secondary structure													S													T	T															T	T									T	T		S	S	S	T	T									T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
					268	.	270	.	.	.	.	.	.	.	.	.										280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.								.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure		.	.	.													.	.	.	.	.	.	.	.	.														.	.														.	.	.	.	.	.	.
Query SS confidence		.	.	.													.	.	.	.	.	.	.	.	.														.	.														.	.	.	.	.	.	.
Query Sequence		.	.	.	L	A	N	A	D	V	V	M	L	V	G	A	.	.	.	.	.	.	.	.	.	R	L	N	W	L	L	A	H	G	K	K	G	W	.	.	A	A	D	T	Q	F	I	Q	L	D	I	E	P	.	.	.	.	.	.	.	Q	E	I	D	S	N	R	P	I	A	V	P	V	V	G	D	I	A	S	S	M
Query Conservation		.	.	.													.	.	.	.	.	.	.	.	.														.	.														.	.	.	.	.	.	.
Alig confidence		.	.	.													.	.	.	.	.	.	.	.	.														.	.														.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	H	D	F	P	D	T	D	L	V	L	V	I	G	A	N	D	T	V	N	S	A	A	Q	E	D	P	N	S	I	I	A	G	M	P	V	L	E	V	W	K	S	K	Q	V	I	V	M	K	R	S	L	G	V	G	Y	A	A	V	D	N	P	I	F	Y	K	P	N	T	A	M	L	L	G	D	A	K	K	T	C
Template Known Secondary structure		G	G	G	G	G	G		S						S			G	G	G		T						S	S	S	T	T	T	T						G	G	G	S	S							S	S	S				T	T					G	G	G	G	S	T	T						S
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		327	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	M	L	A	E	L	K	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	L	Q	A	K	V	R	E	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions