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Job DescriptionP0AFI0
Confidence100.00%DateThu Jan 5 11:26:22 GMT 2012
Rank8Aligned Residues527
% Identity22%Templatec1ozhD_
PDB info PDB header:lyaseChain: D: PDB Molecule:acetolactate synthase, catabolic; PDBTitle: the crystal structure of klebsiella pneumoniae acetolactate2 synthase with enzyme-bound cofactor and with an unusual3 intermediate.
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  QMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNG
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Template Sequence  QWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNL
Template Known Secondary structure  S
TT




GGGTSSS
SSSS

STTT
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   910.........20.........30.........40.........50.........60.........70.........80........
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  LTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLD
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Template Sequence  ITGMATANSEGDPVVALGGAVK. . . . . . . . RADKSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVS
Template Known Secondary structure  T



........GGG



GGG
S


GGGSSS

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   8990.........100.........110 .........120.........130.........140.........150.........160
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  LPANVLAATMEKDEALTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPM
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Template Sequence  LPQDVVDGPVSG. . . . . KVLPASGAPQMGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTST
Template Known Secondary structure  S
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S






T
SS
GGGGSGGG



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   167..170........ .180.........190.........200.........210.........220.........230.........240.
 
   246...250.........260. ........270.........280.........290.........300.........310.......
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Query Sequence  SMAKGILEDTHPLSAA. . . . . . . . AARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVP
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Template Sequence  YQAAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWNS. . GNATLVHIDVLPAYEERNYTPDVE
Template Known Secondary structure  GGGTTTS
GGG
TT
SSBTT

SS

GGGS
GGGT

..S
SSS



BTTB

S
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   242.......250.........260.........270.........280.........290..... ....300.........310.........
 
   318.320.........330.........340.........350.........360.........370.........380.........390.......
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Query Sequence  VVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGAN
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Template Sequence  LVGDIAGTLNKLAQNIDHRLVLSPQAA. . . . . . EILRDRQHQRELLDLNQFALHPLRIVRAMQDIVNSD. VTLTVDMGSF
Template Known Secondary structure  S
T

S




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SSB


TT.

SS
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   320.........330.........340...... ...350.........360.........370.........380.. .......390..
 
   398.400.........410.........420.........430...... ...440.........450.........460.........470......
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Query Sequence  TLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT. SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIFNNGG
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Template Sequence  HIWIAR. YLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNG
Template Known Secondary structure  .TGGG


S


TT

TT
STTS
TTT


SB
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   398.400... ......410.........420.........430.........440.........450.........460.........470......
 
   477..480.........490.........500.........510.........520.........530.........540.........550......
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Query Sequence  IYRGDGVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDPAAGTESGHITKL
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Template Sequence  YNMVAIQEEKKYQ. RLSGVEFGPMDFKAYAESFGAKGFAVESAEALEPTLRAAMDVDGPAVVAIPVDYRDNPLLMGQLHL
Template Known Secondary structure 
S.S

S
B




TTTS

STTT
SS
B

TTTTB

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   477..480......... 490.........500.........510.........520.........530.........540.........550.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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