 |
Job Description | P0A7E1 | Confidence | 75.81% | Date | Thu Jan 5 11:05:27 GMT 2012 |
Rank | 325 | Aligned Residues | 97 |
% Identity | 16% | Template | c3mkcA_ |
PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:racemase; |
PDBTitle: crystal structure of a putative racemase
|
Resolution | 1.77 Å |
|
 |
  |   |
194 | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | |
. | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | T | A | I | K | N | K | Q | N | D | L | Q | A | M | H | H | K | Y | V | P | I | A | V | K | I | A | P | D | L | S | . |
E | E | E | L | I | Q | V | A | D | S | L | V | R | H | N | I | D | G | V | I | A | T | N | T | T | L | D | R | S | L | V | Q | G | M | K | N | C | D | Q | T | G | G | L | S | G | R | P | L | Q |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|   |   |   |   |   | . |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |
Template Sequence |   |
T | K | E | V | A | Y | Y | L | R | E | L | R | G | I | L | G | H | D | T | D | X | X | V | D | Y | L | Y | R | F | T | D | W | Y | E | V | A | R | L | L | N | S | I | E | D | L | E | L | Y | F | A | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | T | L | Q |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S | S |  |  |  |  |  |
| T | T |
|
|
|
|  |  |  |  |  |  |  |  |  |  | T | G | G | G |
|
| S |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S |
| S |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
188 | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | 240 | . | . |
  |
  |   |
273 | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | |
. | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Query Sequence |   |
L | K | S | T | E | I | I | R | R | L | S | L | E | L | N | G | R | L | P | I | I | G | V | G | G | I | D | S | V | I | A | A | R | E | K | I | A | A | G | . |
A | S | L | V | Q | I |
Query Conservation |   |
  |   |
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |   |
|
|
|   |   |
|   |
|
|   |
|   |
|   |   |
| . |
|
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |   |
|   |   |   |   | . | . |   |   |
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|   |
|   |   |
Template Sequence |   |
H | D | D | L | S | G | H | A | K | L | V | E | N | T | . |
. |
R | S | R | I | C | G | A | E | X | S | T | T | R | F | E | A | E | E | W | I | T | K | G | K | V | H | L | L | Q | S |
Template Known Secondary structure |   |
T | T |
|  |  |  |  |  |  |  |  |  |  |
| . | . | S | S |
| B |  |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |
|
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
243 | . | . | . | . | . | . | 250 | . | . | . | . | . | . | |
|
. | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|