Job Description P0A7E1 Confidence 99.66% Date Thu Jan 5 11:05:27 GMT 2012 Rank 68 Aligned Residues 267 % Identity 21% Template c3l5aA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus Resolution 1.65 Å

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		46	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.											.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure							.													.	.	.	.	.	.	.	.	.	.
Query SS confidence							.													.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	N	C	M	.	G	L	T	F	K	N	P	L	G	L	A	A	.	.	.	.	.	.	.	.	.	.	G	L	D	K	D	G	E	C	I	D	A	L	G	A	M	G	F	G	S	I	E	I	G	T	V	T	P	R	P	Q	P	G	N	D	K	P	R	L	F	R	L	V	D	A	E	G	L	I	N	R	M	G
Query Conservation							.													.	.	.	.	.	.	.	.	.	.
Alig confidence							.													.	.	.	.	.	.	.	.	.	.																														.																		.	.	.	.	.
Template Conservation																																																											.																		.	.	.	.	.
Template Sequence		S	I	H	L	P	N	G	I	K	I	S	N	R	F	V	L	S	P	X	T	V	N	A	S	T	K	E	G	Y	I	T	K	A	D	L	A	Y	A	A	R	R	S	N	S	A	G	X	Q	V	T	G	A	A	Y	I	E	P	.	Y	G	K	L	F	E	Y	G	F	N	I	D	H	D	A	C	I	.	.	.	.	.
Template Known Secondary structure						T	T	S				S	S	S											S		T	T														T	T	T	S		S									S	S	G	.	G	G			S	T	T					S	S	G	G	G		.	.	.	.	.
Template Predicted Secondary structure																																																											.																		.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.																																.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		F	N	N	L	G	V	D	N	L	V	E	N	V	K	K	A	H	Y	D	G	V	L	G	I	N	I	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	D	T	P	V	E	Q	G	K	D	D	Y	L	I	C	M	E	K	I	.
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence		.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation		.	.	.
Template Sequence		.	.	.	P	G	L	T	N	X	A	S	T	X	K	Q	H	G	S	L	A	I	I	Q	L	A	H	A	G	R	F	S	N	Q	A	I	L	N	F	G	K	V	Y	G	P	S	P	X	T	L	H	S	P	I	E	H	V	V	I	A	X	S	H	E	K	I	N	S	I	I	Q	Q	Y	R	D	A	T	L	R	A	I
Template Known Secondary structure		.	.	.												T	T	S											G	G	G									S					S	S						S	S	S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		163	.	.	.	.	.	.	170	.	.	.										.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.	.	220
Predicted Secondary structure													.	.	.	.	.	.	.	.	.																.																										.	.	.	.								.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.																.																										.	.	.	.								.	.	.	.	.	.	.	.
Query Sequence		Y	A	Y	A	G	Y	I	A	I	N	I	.	.	.	.	.	.	.	.	.	S	S	P	N	T	P	G	L	R	T	L	Q	Y	G	E	.	A	L	D	D	L	L	T	A	I	K	N	K	Q	N	D	L	Q	A	M	H	H	K	Y	V	P	.	.	.	.	I	A	V	K	I	A	P	.	.	.	.	.	.	.	.
Query Conservation													.	.	.	.	.	.	.	.	.																.																										.	.	.	.								.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.				.												.																										.	.	.	.								.	.	.	.	.	.	.	.
Template Conservation																									.
Template Sequence		K	A	G	F	D	G	V	E	I	S	I	A	Q	R	L	L	I	Q	T	F	F	S	T	.	F	S	N	R	R	T	D	H	Y	G	A	D	S	L	K	N	R	A	R	L	C	L	E	V	X	R	A	V	Q	E	V	I	D	K	E	A	P	D	N	F	I	L	G	F	R	A	T	P	E	E	T	R	G	S	D	L
Template Known Secondary structure			T	T		S								T	T	S								T	.	T	T					S	T	T	S	T	T																										T	T									S					T	T
Template Predicted Secondary structure																									.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		D	L	S	E	E	E	L	I	Q	V	A	D	S	L	.	V	R	H	N	I	D	G	V	I	A	T	N	T	T	L	D	R	S	L	V	Q	G	M	K	N	C	D	Q	T	G	G	L	S	G	R	P	L	Q	L	K	S	T	E	I	I	R	R	L	S	L	E	L	N	G	R	L	P	I	I	G	V	G	G	I	D
Query Conservation																.
Alig confidence																.																																	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.												.	.
Template Sequence		G	Y	T	I	D	E	F	N	Q	L	I	D	W	V	X	D	V	S	N	I	Q	Y	L	A	I	A	S	W	G	R	H	I	Y	Q	N	T	S	R	T	P	G	D	H	F	G	R	P	.	.	.	.	.	.	.	.	.	V	N	Q	I	V	Y	E	H	L	A	G	.	.	R	I	P	L	I	A	S	G	G	I	N
Template Known Secondary structure																			S										T	T			G	G	G		B				S	S	T	T	T	T	S	B	.	.	.	.	.	.	.	.	.										T	T	.	.	S	S						S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.										.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	I	A	A	R	E	K	I	A	A	G	A	S	L	V	Q	I	Y	S	G	F	I	F	K	G	P	P	L	I	K	E	I	V	T	H
Query Conservation
Alig confidence														.												.
Template Conservation														.												.
Template Sequence		S	P	E	S	A	L	D	A	L	Q	H	A	.	D	X	V	G	X	S	S	P	F	V	T	.	E	P	D	F	V	H	K	L	A	E	Q
Template Known Secondary structure		S								G	G	G		.	S					S	T					.		T	T							T	T
Template Predicted Secondary structure														.												.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions