 |
Job Description | P0A7E1 | Confidence | 96.99% | Date | Thu Jan 5 11:05:27 GMT 2012 |
Rank | 196 | Aligned Residues | 88 |
% Identity | 16% | Template | c3g0sA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:dihydrodipicolinate synthase; |
PDBTitle: dihydrodipicolinate synthase from salmonella typhimurium lt2
|
Resolution | 1.85 Å |
|
 |
  |   |
221 | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | L | S | E | E | E | L | I | Q | V | A | D | S | L | V | R | H | N | I | D | G | V | I | A | T | N | T | T | L | D | R | S | L | V | Q | G | M | K | N | C | D | Q | T | G | G | L | S | G | R | P | L | Q | L | K | S | T | E | I | I | R | R | L | S | L | E | L | N | G | R | L | P | I | I | G | V | G | G | I | D | S |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |   |   |   |
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |   |
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|   |   |   |
|
|
|
|
|   |   |   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |
|
Template Sequence |   |
N | V | S | R | S | C | L | K | K | L | I | D | Y | H | V | A | N | G | T | S | A | I | V | S | V | G | T | T | G | E | S | A | T | L | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
H | D | E | H | G | D | V | V | M | M | T | L | E | L | A | D | G | R | I | P | V | I | A | G | T | G | A | N | A |
Template Known Secondary structure |   |
| B |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  | S | S | T | T | T | T | G | G | G | S |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |
|  |  |  |  |
|
|
| S | S |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
18 | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
  |
  |   |
301 | . | . | . | . | . | . | . | |
|
|
|
. | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  | . | . | . | . |  |
|
|
|
|  |  |  |  |
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | I | A | A | R | E | K | I | . |
. |
. |
. |
A | A | G | A | S | L | V | Q | I | Y | S | G | F | I | F | K |
Query Conservation |   |
|   |
|
|   |
|   |
| . | . | . | . |   |   |
|
|
|   |
|   |
|   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |
|   |   |
|   |   |   |
|
|
|   |
|   |
|   |   |
|   |
|   |   |
Template Sequence |   |
T | A | E | A | I | S | L | T | Q | R | F | N | D | S | G | I | V | G | C | L | T | V | T | P | Y | Y | N | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T | T | T | S | S |
|
|  |  |  |  |  |
|
|
| S | S |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|