Job Description P0A7E1 Confidence 99.92% Date Thu Jan 5 11:05:27 GMT 2012 Rank 45 Aligned Residues 175 % Identity 17% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.							.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																			.													.	.	.	.	.	.
Query SS confidence																																			.													.	.	.	.	.	.
Query Sequence		D	G	V	L	G	I	N	I	G	K	N	K	D	T	P	V	E	Q	G	K	D	D	Y	L	I	C	M	E	K	I	Y	A	Y	.	A	G	Y	I	A	I	N	I	S	S	P	N	.	.	.	.	.	.	T	P	G	L	R	T	L	Q	Y	G	E	A	L	D	D	L	L	T	A	I	K	N	K	Q	N	D	L	Q
Query Conservation																																			.													.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.														.													.	.	.	.	.	.																									.	.	.	.
Template Conservation															.	.	.	.	.	.	.																																																									.	.	.	.
Template Sequence		E	H	P	I	A	L	Q	L	A	G	S	D	P	.	.	.	.	.	.	.	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	.	.	.	.
Template Known Secondary structure		G		S								S			.	.	.	.	.	.	.													T	T		S										S							T		G	G	G	G	G	G														T	T		.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.																																																									.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.								70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		A	M	H	H	K	Y	V	P	I	A	V	K	I	A	P	D	L	S	E	.	.	.	.	E	E	L	I	Q	V	A	D	S	L	V	R	H	N	I	D	G	V	I	A	T	N	T	T	L	D	R	S	L	V	Q	G	M	K	N	C	D	Q	T	G	G	L	S	G	R	P	L	Q	L	K	S	T	E	I	I	R	R
Query Conservation																					.	.	.	.
Alig confidence		.	.	.	.	.															.	.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	.	.	.	.	.	.	.	.	.	.	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R
Template Known Secondary structure		.	.	.	.	.	S	S								S		B	T	T																	T	T									S		B		T	T	.	.	.	.	.	.	.	.	.	.	S		T	T	G	G	G	T	S	S
Template Predicted Secondary structure		.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
							126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.											.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	L	E	L	N	G	R	L	P	I	I	G	V	G	G	I	D	S	V	I	A	A	R	E	K	I	A	A	G	A	S	L	V	Q	I	Y	S	G	F	I	F	K	G	P	P	L	I	K	E	I	V	T	H	I
Query Conservation
Alig confidence								.																					.																.
Template Conservation								.																					.																.
Template Sequence		L	K	G	D	F	P	.	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	.	K	R	V	D	G	V	X	L	G	R	A	V	Y	E	D	.	P	F	V	L	E	E	A	D	R	R	V
Template Known Secondary structure							T	.	T	S						S	S			S									.	T	T	S	S					S							.	G	G	G	G	T	T					T
Template Predicted Secondary structure								.																					.																.
Template SS confidence
		191	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions