Job Description P0A7E1 Confidence 100.00% Date Thu Jan 5 11:05:27 GMT 2012 Rank 15 Aligned Residues 273 % Identity 17% Template c1kbiB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome b2; PDBTitle: crystallographic study of the recombinant flavin-binding domain of2 baker's yeast flavocytochrome b2: comparison with the intact wild-3 type enzyme Resolution 2.30 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.									.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.																				.
Query SS confidence																																																			.	.	.	.	.	.	.	.																				.
Query Sequence		D	P	E	R	A	H	E	F	T	F	Q	Q	L	R	R	I	T	G	T	P	F	E	A	L	V	R	Q	K	V	P	A	K	P	V	N	C	M	G	L	T	F	K	N	P	L	G	L	A	A	.	.	.	.	.	.	.	.	G	L	D	K	D	G	E	C	I	D	A	L	G	A	M	G	F	G	S	.	I	E	I
Query Conservation																																																			.	.	.	.	.	.	.	.																				.
Alig confidence																						.																													.	.	.	.	.	.	.	.																				.
Template Conservation																						.
Template Sequence		N	D	E	V	T	H	R	E	N	H	N	A	Y	H	R	I	F	F	K	P	.	K	I	L	V	D	V	R	K	V	D	I	S	T	D	M	L	G	S	H	V	D	V	P	F	Y	V	S	A	T	A	L	C	K	L	G	N	P	L	E	G	E	K	D	V	A	R	G	C	G	Q	G	V	T	K	V	P	Q	M	I
Template Known Secondary structure		T	T										G	G	G	G						.			S				S	S		B						T	T				S	S	S							S		G	G	G	T	S	T	T	T	T										S	S	S	S
Template Predicted Secondary structure																						.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.								.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.
Query Sequence		G	T	V	T	P	R	P	Q	P	.	.	.	.	.	.	.	G	N	D	K	P	R	L	F	R	L	V	D	A	E	G	L	I	N	R	M	G	F	N	N	L	G	V	D	N	L	V	E	N	V	K	K	A	H	Y	D	G	V	L	G	I	N	I	G	K	N	K	D	T	P	V	E	Q	G	K	D	D	Y	L	I
Query Conservation											.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.																.	.	.	.	.	.	.	.																																							.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.																																							.	.	.
Template Sequence		S	T	L	A	S	C	S	P	E	E	I	I	E	A	A	P	S	D	K	Q	I	Q	W	Y	Q	L	Y	V	N	S	D	.	.	.	.	.	.	.	.	R	K	I	T	D	D	L	V	K	N	V	E	K	L	G	V	K	A	L	F	V	T	V	D	A	P	S	L	G	Q	R	E	K	D	M	K	L	K	.	.	.
Template Known Secondary structure			T	T		S	S										S		S	S											S	S	.	.	.	.	.	.	.	.															T									S		S	S												.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.																																							.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.									.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	M	E	K	I	Y	A	Y	A	G	Y	I	A	I	N	I	S	S	P	N	T	P	G	L	R	T	L	Q	Y	G	E	A	L	D	D	L	L	T	A	I	K	N	K	Q	N	D	L	Q	A	M	H	H	K	Y	V	P	I	A	V	K	I	A	P	D	L	S	E	E	E	L	I	Q	V	A	D	S	L	V	R	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																																		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																																		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	F	S	N	T	K	T	N	V	E	E	S	Q	.	.	.	.	.	.	.	G	A	S	R	A	L	S	K	F	I	D	P	S	L	T	W	K	D	I	E	E	L	K	K	K	T	K	L	P	I	V	I	K	.	.	.	.	.	.	G	V	Q	R	T	E	D	V	I	K	A	A	E	I
Template Known Secondary structure		.	.	.	.	.	.	.	.		T	T				S		S	S		S	.	.	.	.	.	.	.	G	G	G	G	G			S	S	S		T	T												T			S						.	.	.	.	.	.				S										T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																																		.	.	.	.	.	.
Template SS confidence
										297	.	.	300	.	.	.	.	.	.	.	.								.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.							.	.	.	.	.	.	.	.	350	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.						.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																																		.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.
Query Sequence		N	I	D	G	V	I	A	T	N	T	T	L	D	R	S	L	V	Q	G	M	K	N	C	D	Q	T	G	G	L	S	G	R	P	L	Q	L	K	S	T	E	I	I	R	R	L	S	L	E	.	.	.	.	.	L	N	G	R	L	P	I	I	G	V	G	G	I	D	S	V	I	A	A	R	E	K	I	A	A	G	A
Query Conservation																																																		.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	S	G	V	V	L	S	N	H	G	G	R	Q	L	D	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	P	I	E	V	L	A	E	T	M	P	I	L	E	Q	R	N	L	K	D	K	L	E	V	F	V	D	G	G	V	R	R	G	T	D	V	L	K	A	L	C	L	G	A
Template Known Secondary structure		T		S							T	T	T	T	S	S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T	T	G	G	G	T	S						S	S			S											T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.																		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.					.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		S	L	V	Q	I	Y	S	G	F	I	F	K	.	.	.	.	G	P	P	L	I	K	E	I	V	T	H	I
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.
Template Conservation
Template Sequence		K	G	V	G	L	G	R	P	F	L	Y	A	N	S	C	Y	G	R	N	G	V	E	K	A	I	E	I	L
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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