Job Description P0A7E1 Confidence 100.00% Date Thu Jan 5 11:05:27 GMT 2012 Rank 7 Aligned Residues 304 % Identity 22% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30									.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.																																		.
Query SS confidence																			.	.	.	.	.	.	.	.																																		.
Query Sequence		D	P	E	R	A	H	E	F	T	F	Q	Q	L	R	R	I	T	.	.	.	.	.	.	.	.	G	T	P	F	E	A	L	V	R	Q	K	V	P	A	K	P	V	N	C	M	G	L	T	F	K	N	P	L	G	L	A	A	G	.	L	D	K	D	G	E	C	I	D	A	L	G	A	M	G	F	G	S	I	E	I
Query Conservation																			.	.	.	.	.	.	.	.																																		.
Alig confidence																			.	.	.	.	.	.	.	.				.																														.
Template Conservation																														.
Template Sequence		D	G	K	Q	A	S	W	Y	I	H	K	Y	I	Q	A	Q	Y	G	A	S	V	S	A	K	P	E	L	P	.	L	F	Y	T	P	V	D	L	V	D	I	S	V	E	M	A	G	L	K	F	I	N	P	F	G	L	A	S	A	A	P	T	T	S	S	S	M	I	R	R	A	F	E	A	G	W	G	F	A	L	T
Template Known Secondary structure																		T	T					S	S					.			B		G	G	G	G								T	T				S	S	S					S	S	G	G	G	S	S											T		S
Template Predicted Secondary structure																														.
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.		.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
		85	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.									.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure						.																			.	.	.	.	.	.	.	.																														.	.	.
Query SS confidence						.																			.	.	.	.	.	.	.	.																														.	.	.
Query Sequence		G	T	V	T	.	P	R	P	Q	P	G	N	D	K	P	R	L	F	R	L	V	D	A	.	.	.	.	.	.	.	.	E	G	L	I	N	R	M	G	F	N	N	L	G	V	D	N	L	V	E	N	V	K	K	A	H	Y	D	G	V	.	.	.	L	G	I	N	I	G	K	N	K	D	T	P	V	E	Q	G	K
Query Conservation						.																			.	.	.	.	.	.	.	.																														.	.	.
Alig confidence						.																			.	.	.	.	.	.	.	.																														.	.	.									.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.
Template Sequence		K	T	F	S	L	D	K	D	I	V	T	N	V	S	P	R	I	V	R	G	T	T	S	G	P	M	Y	G	P	G	Q	S	S	F	L	N	I	E	L	I	S	E	K	T	A	A	Y	W	C	Q	S	V	T	E	L	K	A	D	F	P	D	N	I	V	I	A	S	I	M	C	S	.	.	.	.	.	.	Y	N	K
Template Known Secondary structure				B			G	G	G						S	S							T	T		S			S	S			S								S		S	S																	T	T	S										.	.	.	.	.	.	S
Template Predicted Secondary structure																																																																									.	.	.	.	.	.
Template SS confidence
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.							.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.						.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure														.																					.	.	.	.	.
Query SS confidence														.																					.	.	.	.	.
Query Sequence		D	D	Y	L	I	C	M	E	K	I	Y	A	.	Y	A	G	Y	I	A	I	N	I	S	S	P	N	T	P	G	L	R	T	L	.	.	.	.	.	Q	Y	G	E	A	L	D	D	L	L	T	A	I	K	N	K	Q	N	D	L	Q	A	M	H	H	K	Y	V	P	I	A	V	K	I	A	P	D	L	S	E	E	E
Query Conservation														.																					.	.	.	.	.
Alig confidence														.																					.	.	.	.	.																		.	.	.	.	.	.	.	.	.															.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.															.	.
Template Sequence		N	D	W	M	E	L	S	R	K	A	E	A	S	G	A	D	A	L	E	L	N	L	S	C	P	H	G	M	G	E	R	G	M	G	L	A	C	G	Q	D	P	E	L	V	R	N	I	C	R	W	V	R	Q	A	V	.	.	.	.	.	.	.	.	.	Q	I	P	F	F	A	K	L	T	P	N	V	T	D	.	.
Template Known Secondary structure														T	T		S										S	S	G	G	G	G	T		T																						.	.	.	.	.	.	.	.	.	S	S								S		S	S		.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.															.	.
Template SS confidence
		648	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.										.	.	.	.	.	.	.	710	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.										.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	Q	V	A	D	S	L	V	R	H	N	I	D	G	V	I	A	T	N	T	T	L	D	R	S	L	V	Q	G	M	.	.	.	.	.	.	.	.	.	K	N	C	D	Q	T	G	G	L	S	G	R	P	L	Q	L	K	S	T	E	I	I	R	R	L	S	L	E	L	N	G	R	L	P	I	I	G	V	G	G
Query Conservation																																	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.																															.
Template Conservation																																																																								.
Template Sequence		I	V	S	I	A	R	A	A	K	E	G	G	A	D	G	V	T	A	T	N	T	V	S	G	L	M	G	L	K	A	D	G	T	P	W	P	A	V	G	A	G	K	R	T	T	Y	G	G	V	S	G	T	A	I	R	P	I	A	L	R	A	V	T	T	I	A	R	A	L	P	.	G	F	P	I	L	A	T	G	G
Template Known Secondary structure													T		S														B		T	T	S		B	S	S		B	T	T	T	T	B								S	G	G	G															S	T	.	T							S	S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		717	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.		.	.	.	790	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	S	V	I	A	A	R	E	K	I	A	A	G	A	S	L	V	Q	I	Y	S	G	F	I	F	K	G	P	P	L	I	K	E	I	V	T	H	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	S	A	E	S	G	L	Q	F	L	H	S	G	A	S	V	L	Q	V	C	S	A	V	Q	N	Q	D	F	T	V	I	Q	D	Y	C	T	G	L
Template Known Secondary structure				S										T	T		S					S					T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		796	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions