Job Description P0A7E1 Confidence 99.89% Date Thu Jan 5 11:05:27 GMT 2012 Rank 52 Aligned Residues 270 % Identity 14% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.									.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.
Query Sequence		P	V	N	C	M	G	L	T	F	K	N	P	L	G	L	A	A	G	L	D	K	D	.	.	.	.	.	.	.	.	G	E	C	I	D	A	L	G	A	M	G	F	G	S	I	E	I	G	T	V	T	P	R	P	Q	P	G	N	D	K	P	R	L	F	R	L	V	D	A	E	G	L	I	N	R	M	G	F	N	N
Query Conservation																								.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		P	I	Q	I	G	P	K	T	L	R	N	R	F	Y	Q	V	P	H	C	I	G	A	G	S	D	K	P	G	F	Q	S	A	H	R	S	V	K	A	E	G	G	W	A	A	L	N	T	E	Y	C	S	I	N	P	E	S	D	D	T	H	R	L	S	A	R	I	W	D	E	G	D	V	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T				S	S	S									S		T	T	T															T	T		S									S	S	T	T	S			T	T	S						S	S					.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.																															.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		L	G	V	D	N	L	V	E	N	V	K	K	A	H	Y	D	G	V	L	G	I	N	I	G	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	D	T	P	V	E	Q	G	K	D	D	Y	L	I	C	M	E	K	I	.	Y	A	Y	A
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		R	N	L	K	A	M	T	D	E	V	H	K	Y	G	A	L	A	G	V	E	L	W	Y	G	G	A	H	A	P	N	M	E	S	R	A	T	P	R	G	P	S	Q	Y	A	S	E	F	E	T	L	S	Y	C	K	E	M	D	L	S	D	I	A	Q	V	Q	Q	F	Y	V	D	A	A	K	R	S	R	D	A	G	F
Template Known Secondary structure														T	T											G	G	G	S			T	T	T							S	S			B		S	S	S	T	T		B																										T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		167	.	.	170	.	.	.	.										.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.								.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure										.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Query Sequence		G	Y	I	A	I	N	I	S	.	.	.	.	.	.	.	.	.	S	P	N	T	P	G	L	R	T	L	Q	Y	G	E	A	L	D	D	L	L	T	A	I	K	N	K	Q	N	D	L	Q	A	M	H	H	K	Y	V	P	I	A	V	K	I	.	.	.	.	.	.	.	A	P	D	L	S	E	E	E	L	I	Q	V
Query Conservation										.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.			.																																										.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	.	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A	T	R	F	G	V	D	T	V	Y	G	P	G	Q	I	E	A	E	V	D	G	Q	K
Template Known Secondary structure		S								T	T									T	.	T	T					S	T	T	S	S	S																				T	T	T	S											S	S		T	T	S			T	T	T
Template Predicted Secondary structure																					.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	S	L	V	R	H	N	I	D	G	V	I	A	T	N	T	T	L	D	R	S	L	V	Q	G	M	K	N	C	D	Q	T	G	G	L	S	G	R	P	L	Q	L	K	S	T	E	I	I	R	R	L	S	L	E	L	N	G	R	L	P	I	I	G	V	G	G	I	D	S	V	I	A	A	R	E	K	I	A	A
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.												.	.
Template Conservation																																							.	.	.	.	.	.	.	.												.	.
Template Sequence		F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	.	.	.	.	.	.	.	.	I	P	W	V	K	L	V	K	Q	V	S	.	.	K	K	P	V	L	G	V	G	R	Y	T	D	P	E	K	M	I	E	I	V	T	K
Template Known Secondary structure							T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T	.	.	.	.	.	.	.	.									T	T		.	.	S	S						S														T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.												.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.									280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		311		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		G	.	A	S	L	V	Q	I	Y	S	G	F	I	F	K	G	P	P	L	I	K	E	I	V	T	H
Query Conservation			.
Alig confidence			.													.
Template Conservation																.
Template Sequence		G	Y	A	D	I	I	G	C	A	R	P	S	I	A	.	D	P	F	L	P	Q	K	V	E	Q	G
Template Known Secondary structure		T	S		S	B				S						.		T	T							T	T
Template Predicted Secondary structure																.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions