Job Description P52643 Confidence 99.95% Date Thu Jan 5 12:05:56 GMT 2012 Rank 48 Aligned Residues 290 % Identity 20% Template c3n58D_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from brucella2 melitensis in ternary complex with nad and adenosine, orthorhombic3 form Resolution 2.39 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		K	L	A	V	Y	S	T	K	Q	Y	D	K	K	Y	L	Q	Q	V	N	E	S	F	G	F	E	L	E	F	F	.	.	.	D	F	L	L	T	E	K	T	A	K	T	A	N	G	C	E	A	V	C	I	F	V	N	D	D	G	S	R	P	V	L	E	E	L	K	K	H	G	V	K	Y	I	A	L	R	C	A	G
Query Conservation																															.	.	.
Alig confidence																															.	.	.																																				.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		R	I	S	G	S	L	H	M	T	I	Q	T	A	V	L	I	E	T	L	K	V	L	G	A	E	V	R	W	A	S	C	N	I	F	S	T	Q	D	H	A	A	A	A	I	A	A	T	G	T	P	V	F	A	V	K	G	E	T	L	E	E	Y	W	T	Y	T	D	.	.	.	Q	I	F	Q	W	P	D	G	E	P
Template Known Secondary structure							S			S													T	T								S	S	T	T												T	T	T							T	T												.	.	.		T	T			T	T	S
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.				.	.	.	.	120	.	.	.	.	.
		79	80	.	.																																																																									.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	N	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	D	A
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	M	I	L	D	D	G	G	D	A	T	M	Y	I	L	I	G	A	R	A	E	A	G	E	D	V	L	S	N	P	Q	S	E	E	E	E	V	L	F	A	Q	I	K	K	R	M	A	A	T	P	G	F	F	T	K	Q	R	A	A	I	K	G	V	T	E	E	T	T	T	G	V	N	R	L	Y	Q	L	Q	K
Template Known Secondary structure			S					S	S	S														T	T				S	S	S			S																	S	T	T																S
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	E	L	G	L	K	V	V	R	V	P	A	Y	D	P	E	A	V	A	E	H	A	I	G	M	M	M	T	L	N	R	R	I	H	R	A	Y	Q	R	T	R	D	A	N	F	S	L	E	G	L	T	G	F	T	M	Y	G	K	T	A	G	V	I	G	T	G	K	I	G	V	A	M	L	R	I	L	K	G	F
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	L	L	P	F	P	A	I	N	V	N	D	S	V	T	K	S	K	F	D	N	K	Y	G	C	K	E	S	L	V	D	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	G	T	D	V	M	M	A	G	K	V	A	V	V	C	G	Y	G	D	V	G	K	G	S	A	Q	S	L	A	G	A
Template Known Secondary structure			T				S						T	T	S					T	T															.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T									S												T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.															240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.
Predicted Secondary structure																.	.																																																										.
Query SS confidence																.	.																																																										.
Query Sequence		G	M	R	L	L	A	F	D	P	Y	P	S	A	A	.	.	A	L	E	L	G	V	E	Y	V	D	L	P	T	L	F	S	E	S	D	V	I	S	L	H	C	P	L	T	P	E	N	Y	H	L	L	N	E	A	A	F	E	Q	M	K	N	G	V	M	I	V	N	T	S	R	G	A	L	.	I	D	S	Q	A	A
Query Conservation																.	.																																																										.
Alig confidence																.	.																											.	.	.	.																												.
Template Conservation																																												.	.	.	.
Template Sequence		G	A	R	V	K	V	T	E	V	D	P	I	C	A	L	Q	A	A	M	D	G	F	E	V	V	T	L	D	D	A	A	S	T	A	D	I	V	V	T	T	T	G	.	.	.	.	N	K	D	V	I	T	I	D	H	M	R	K	M	K	D	M	C	I	V	G	N	I	G	H	F	D	N	E	I	Q	V	A	A	L
Template Known Secondary structure		T								S											T	T										G	G	G		S						S	S	.	.	.	.		S	S	S	B								S		T	T							S	S	S	T	T	S	B			G	G	G
Template Predicted Secondary structure																																												.	.	.	.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.					.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		I	E	A	L	K	N	Q	K	I	G	S	L	G	M	D	V	Y	E	N	E	R	D	L	F	F	E	D	K	S	N	D	V	I	Q	D	D	V	F	R	R	L	S	A	C	H	N	V	L	.	F	T	G	H	Q	A	F	L	T	A	E	A	L	T	S	I	S	Q	T	T	L	Q	N	L	S	N	L	E	K	G	E
Query Conservation																																																		.
Alig confidence				.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation				.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	N	.	.	L	K	W	T	N	V	K	P	Q	V	D	L	I	E	F	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	R	L	I	L	L	S	E	G	R	L	L	N	L	G	N	A	T	G	H	P	S	F	V	M	S	A	S	F	T	N	Q	V	L	G	Q	I	E	L	F	T	R	T	D
Template Known Secondary structure		T	T	.	.	S							T	T							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							G	G	G	S	B						S			S																						S	G	G
Template Predicted Secondary structure				.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		348	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.															.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		323	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	C	P	N	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Y	K	N	E	V
Template Known Secondary structure		G			S	S
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions