Job Description P52643 Confidence 100.00% Date Thu Jan 5 12:05:56 GMT 2012 Rank 28 Aligned Residues 279 % Identity 23% Template c3gvxA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glycerate dehydrogenase related protein; PDBTitle: crystal structure of glycerate dehydrogenase related2 protein from thermoplasma acidophilum Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		M	K	L	A	V	Y	S	T	K	Q	Y	D	K	K	Y	L	Q	Q	V	N	E	S	F	.	G	F	E	L	E	F	F	D	F	L	L	T	E	K	T	A	K	T	A	N	G	C	E	A	V	C	I	F	V	N	D	D	G	S	R	P	V	L	E	E	L	K	K	H	G	V	K	Y	I	A	L	R	C	A	G	F
Query Conservation																									.
Alig confidence							.	.																	.													.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.									.	.
Template Conservation							.	.																														.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.									.	.
Template Sequence		L	D	V	Y	V	.	.	N	F	P	A	D	G	H	V	R	E	I	A	K	T	V	L	D	G	F	D	L	H	W	Y	P	D	Y	Y	D	.	.	.	.	.	.	.	.	.	A	E	A	Q	V	I	.	.	.	.	.	.	.	K	D	R	Y	V	L	G	K	.	.	R	T	K	X	I	Q	A	I	S	A	G	V
Template Known Secondary structure							.	.		S														T	T	T	S					T	T	S				.	.	.	.	.	.	.	.	.		S					.	.	.	.	.	.	.	S	S						S	.	.	S								S	S
Template Predicted Secondary structure							.	.																														.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.									.	.
Template SS confidence
		1	.	.	.	.			.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.										.	.	.	.	.	40								.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	V	D	L	D	A	A	K	E	L	G	L	K	V	V	R	V	P	A	Y	D	P	E	A	V	A	E	H	A	I	G	M	M	M	T	L	N	R	R	I	H	R	A	Y	Q	R	T	R	D	A	N	F	S	L	E	G	L	T	G	F	T	M	Y	G	K	T	A	G	V	I	G	T	G	K	I	G	V	A	M
Query Conservation
Alig confidence															.																																								.	.
Template Conservation															.																																								.	.
Template Sequence		D	H	I	D	V	N	G	I	P	E	N	V	V	.	L	C	S	N	A	G	A	Y	S	I	S	V	A	E	H	A	F	A	L	L	L	A	H	A	K	N	I	L	E	N	N	E	L	X	K	A	G	I	F	.	.	R	Q	S	P	T	T	L	L	Y	G	K	A	L	G	I	L	G	Y	G	G	I	G	R	R	V
Template Known Secondary structure		T	T	S		G	G	G	S		T	T	S		.																									T	T										T	T			.	.									T	T									S
Template Predicted Secondary structure															.																																								.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	I	L	K	G	F	G	M	R	L	L	A	F	D	P	Y	P	S	A	A	A	L	E	L	G	V	E	Y	V	D	L	P	T	L	F	S	E	S	D	V	I	S	L	H	C	P	L	T	P	E	N	Y	H	L	L	N	E	A	A	F	E	Q	M	K	N	G	V	M	I	V	N	T	S	R	G	A	L	I	D
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		A	H	L	A	K	A	F	G	X	R	V	I	A	Y	T	R	S	S	V	D	.	.	Q	N	V	D	V	I	S	E	S	P	A	D	L	F	R	Q	S	D	F	V	L	I	A	I	P	L	T	D	K	T	R	G	X	V	N	S	R	L	L	A	N	A	R	K	N	L	T	I	V	N	V	A	R	A	D	V	V	S
Template Known Secondary structure									T								S	S				.	.	T	T		S				S	S									S										T	T	T	T	T		B	S					T	T			T	T							S		G	G	G	B
Template Predicted Secondary structure																						.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		S	Q	A	A	I	E	A	L	K	N	Q	K	I	G	S	L	G	M	D	V	Y	E	N	E	R	D	L	F	F	E	D	K	S	N	D	V	I	Q	D	D	V	F	R	R	L	S	A	C	H	N	V	L	F	T	G	H	Q	A	F	L	.	T	A	E	A	L	T	S	I	S	Q	T	T	L	Q	N	L	S	N	L
Query Conservation																																																														.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.													.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template Sequence		K	P	D	X	I	G	F	L	K	E	R	S	D	V	W	Y	L	S	D	V	W	W	N	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	T	E	T	N	L	.	.	.	R	N	A	I	L	S	P	H	V	A	G	G	X	S	G	E	I	X	D	I	A	I	Q	L	A	F	E	N	V	R	N	F
Template Known Secondary structure													T	T						S			T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S			S				.	.	.	S	S						S		S	S		B	T	T	B
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240														.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		319	320
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions