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Job DescriptionP52643
Confidence100.00%DateThu Jan 5 12:05:56 GMT 2012
Rank22Aligned Residues311
% Identity25%Templatec2w2kB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:d-mandelate dehydrogenase; PDBTitle: crystal structure of the apo forms of rhodotorula graminis2 d-mandelate dehydrogenase at 1.8a.
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  KLAVYST. KQYDKKYLQQVNESFGFELEFFDFLLTEKTAK. . . . . TANGCEAVCIFV. . . . . . NDDGSRPVLEELKKHGV
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Template Sequence  RVLLLGDPARHLDDLWSDFQQK. . FEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPS. SL
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B
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Query Sequence  KYIALRCAGFNNVDLDAAKELGLKVVRVPAYDPEAVAEHAIGMMMTLNRRIHRAYQRTRDANFSL. . . . . . . EGLTGFTM
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Template Sequence  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNP
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SSS

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Query Sequence  YGKTAGVIGTGKIGVAMLRIL. KGFGMRLLAFDPYPSAA. . . ALELGVEYVDLPTLFSESDVISLHCPLTPENYHLLNEA
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Template Sequence  RGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEA
Template Known Secondary structure  TTS

STT


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SGGGTT
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Query Sequence  AFEQMKNGVMIVNTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVIQDDVFRRLSACHNVLFTGHQAF
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Template Sequence  FFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP. . . . . . . . . . . . . . NVSKELIEMKHVTLTTHIGG
Template Known Secondary structure  S
TT
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GGGB
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Query Sequence  LTAEALTSISQTTLQNLSNLEKGETCPNELV
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Template Sequence  VAIETFHEFERLTMTNIDRFLLQGKPLLTPA
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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