Job Description P52643 Confidence 99.89% Date Thu Jan 5 12:05:56 GMT 2012 Rank 59 Aligned Residues 229 % Identity 15% Template c2rirA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase, a chain; PDBTitle: crystal structure of dipicolinate synthase, a chain, from bacillus2 subtilis Resolution 2.79 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.											.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	L	A	V	Y	S	T	K	Q	Y	D	K	K	Y	L	Q	Q	V	N	E	S	F	G	F	E	L	E	F	F	D	F	L	L	T	E	.	.	.	.	.	.	.	.	.	.	K	T	A	K	T	A	N	G	C	E	A	V	C	I	F	V	N	D	D	G	S	R	P	V	L	E	E	L	K	K	H	G	V	K
Query Conservation																																						.	.	.	.	.	.	.	.	.	.
Alig confidence																								.														.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation																								.																																											.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	I	A	V	I	G	G	D	A	R	Q	L	E	I	I	R	K	L	T	E	Q	.	Q	A	D	I	Y	L	V	G	F	D	Q	L	D	H	G	F	T	G	A	V	K	C	N	I	D	E	I	P	F	Q	Q	I	D	S	I	I	L	P	V	S	A	T	.	.	.	.	.	.	.	.	.	.	T	G	E	G	V
Template Known Secondary structure								S	B														T	.	T							S		T	T	S	S				T	T						G	G	G	S		G	G	G		S						S	S			.	.	.	.	.	.	.	.	.	.		T	T	T
Template Predicted Secondary structure																								.																																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.											.	70	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																																.	.	.	.																	.	.	.
Query SS confidence																																																.	.	.	.																	.	.	.
Query Sequence		Y	I	A	L	R	C	A	G	F	N	N	V	D	L	D	A	A	K	E	L	G	L	K	V	V	R	V	P	A	Y	D	P	E	A	V	A	E	H	A	I	G	M	M	M	T	L	.	.	.	.	N	R	R	I	H	R	A	Y	Q	R	T	R	D	A	N	F	.	.	.	S	L	E	G	L	T	G	F	T	M	Y
Query Conservation																																																.	.	.	.																	.	.	.
Alig confidence																																																.	.	.	.																	.	.	.
Template Conservation
Template Sequence		V	S	T	V	F	S	N	E	E	V	V	L	K	Q	D	H	L	D	R	T	P	A	H	C	V	I	F	S	G	I	S	N	A	Y	L	E	N	I	A	A	Q	A	K	R	K	L	V	K	L	F	E	R	D	D	I	A	I	Y	N	S	I	P	T	V	E	G	T	I	X	L	A	I	Q	H	T	D	Y	T	I	H
Template Known Secondary structure				B	S	S		S	S											T	S		T	T						S	S												T	T						G	G	G	S																						T		S	S		S	T
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		G	K	T	A	G	V	I	G	T	G	K	I	G	V	A	M	L	R	I	L	K	G	F	G	M	R	L	L	A	F	D	P	Y	P	S	A	A	A	L	E	.	.	.	.	.	L	G	V	E	Y	V	D	L	P	T	L	F	S	E	S	D	V	I	S	L	H	C	P	L	T	P	E	N	Y	H	L	L	N	E	A
Query Conservation																																										.	.	.	.	.
Alig confidence																																										.	.	.	.	.																								.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.
Template Sequence		G	S	Q	V	A	V	L	G	L	G	R	T	G	X	T	I	A	R	T	F	A	A	L	G	A	N	V	K	V	G	A	R	S	S	A	H	L	A	R	I	T	E	X	G	L	V	P	F	H	T	D	E	L	K	E	H	V	K	D	I	D	I	C	I	N	T	I	P	.	.	.	.	.	S	X	I	L	N	Q	T
Template Known Secondary structure		T	S								S													T	T								S	S										T	T						G	G	G					S	T	T		S							S	.	.	.	.	.	S			B
Template Predicted Secondary structure																																																																						.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		A	F	E	Q	M	K	N	G	V	M	I	V	N	T	S	.	R	G	A	L	I	D	S	Q	A	A	I	E
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		V	L	S	S	X	T	P	K	T	L	I	L	D	L	A	S	R	P	G	G	T	D	F	K	Y	A	E	K
Template Known Secondary structure				T	T	S		T	T							S	S	T	T		S	B
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions