Job Description P52643 Confidence 99.97% Date Thu Jan 5 12:05:56 GMT 2012 Rank 40 Aligned Residues 297 % Identity 13% Template c2eezG_ PDB info PDB header:oxidoreductase Chain: G: PDB Molecule:alanine dehydrogenase; PDBTitle: crystal structure of alanine dehydrogenase from themus thermophilus Resolution 2.71 Å

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		1	.	.	.	.	.		.	.	.	10	.	.	.							.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.							.	.	.	.	.	.	40										.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure								.								.	.	.	.	.	.																					.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Query SS confidence								.								.	.	.	.	.	.																					.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Query Sequence		M	K	L	A	V	Y	.	S	T	K	Q	Y	D	K	.	.	.	.	.	.	K	Y	L	Q	Q	V	N	E	S	F	G	F	E	L	E	F	F	D	F	L	.	.	.	.	.	.	L	T	E	K	T	A	K	.	.	.	.	.	.	.	.	.	T	A	N	G	C	E	A	V	C	I	F	V	N	D	D	G	S	R
Query Conservation								.								.	.	.	.	.	.																					.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Alig confidence								.								.	.	.	.	.	.										.											.	.	.	.	.	.								.	.	.	.	.	.	.	.	.							.
Template Conservation																															.																																							.
Template Sequence		M	V	I	G	V	P	K	E	I	K	T	L	E	N	R	V	A	L	T	P	G	G	V	E	S	L	V	R	R	.	G	H	T	V	L	V	E	R	G	A	G	E	G	S	G	L	S	D	A	E	Y	A	R	A	G	A	E	L	V	G	R	E	E	A	W	G	A	E	.	M	V	V	K	V	K	E	P	L	P	E
Template Known Secondary structure											S	T	T					S												T	.	T							T	T	T	T	G	G	G	T									T	T										T	T	S	S	.					S	S				G	G
Template Predicted Secondary structure																															.																																							.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		P	V	L	E	E	L	K	K	H	G	V	K	Y	I	A	L	R	C	A	G	F	N	N	V	D	L	D	A	A	K	E	L	G	L	K	V	V	R	V	P	A	Y	D	P	E	A	V	A	E	H	A	I	G	M	M	M	T	L	N	R	R	I	H	R	A	Y	Q	R	T	R	D	A	N	F	S	L	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence									.	.																																																																				.	.	.	.
Template Conservation									.	.
Template Sequence		E	Y	G	F	L	R	E	.	.	G	L	I	L	F	T	Y	L	H	L	A	A	D	R	G	L	T	E	A	M	L	R	S	G	V	T	G	I	A	Y	E	T	V	Q	L	P	D	G	T	L	P	L	L	V	P	M	S	E	V	A	G	R	M	A	P	Q	V	G	A	Q	F	L	E	K	P	K	G	G	R	G	V
Template Known Secondary structure		G	G	G	G			T	.	.	T									G	G	G												T						G	G	G				T	T	S			T	T	T																			T	S	G	G	G	T	S
Template Predicted Secondary structure									.	.
Template SS confidence
		79	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.											180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.
Query Sequence		E	G	L	T	G	F	T	M	Y	G	K	T	A	G	V	I	G	T	G	K	I	G	V	A	M	L	R	I	L	K	G	F	G	M	R	L	L	A	F	D	P	Y	P	S	A	.	.	.	.	.	.	.	.	.	.	A	A	L	E	L	G	V	E	Y	V	D	L	P	T	L	F	S	E	S	D	V	I	S	L	H
Query Conservation																																															.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	G	G	V	P	G	V	A	P	A	S	V	V	I	L	G	G	G	T	V	G	T	N	A	A	K	I	A	L	G	M	G	A	Q	V	T	I	L	D	V	N	H	K	R	L	Q	Y	L	D	D	V	F	G	G	R	V	I	T	L	T	A	T	E	A	N	I	K	K	S	V	Q	H	A	D	L	L	I	G	A
Template Known Secondary structure			T	T		B	T	T	B											S													T	T								S												T	T	T		S																T		S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		C	P	L	T	P	E	N	Y	H	L	L	N	E	A	A	F	E	Q	M	K	N	G	V	M	I	V	N	T	S	R	G	A	L	I	D	S	Q	A	A	I	E	A	L	K	N	Q	K	I	G	S	L	G	M	D	V	Y	E	N	E	R	D	L	F	F	E	D	K	S	N	D	V	I	Q	D	D	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence				.	.	.	.	.	.																																				.																	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.	.
Template Conservation				.	.	.	.	.	.																																				.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	.	.	.	.	.	.	K	L	V	T	R	D	M	L	S	L	M	K	E	G	A	V	I	V	D	V	A	Y	V	V	D	G	V	V	H	Y	G	V	A	N	M	.	P	G	A	V	P	R	T	S	T	F	A	L	T	N	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	Y	V	L	K	L
Template Known Secondary structure				.	.	.	.	.	.			S						T	T	S		T	T											T	T							S		G	.	G	G	G	S													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.																																				.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.							.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.														290	.	.	.	.	.	.
				280	.	.	.	.	.	.	.	.	.	290	.				.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure		.	.													.	.	.
Query SS confidence		.	.													.	.	.
Query Sequence		.	.	V	F	R	R	L	S	A	C	H	N	V	L	.	.	.	F	T	G	H	Q	A	F	L	T	A	E	A	L	T	S	I	S	Q	T	T	L	Q	N	L	S	N	L	E	K	G
Query Conservation		.	.													.	.	.
Alig confidence		.	.													.	.	.
Template Conservation
Template Sequence		A	E	K	G	L	D	A	L	L	E	D	A	A	L	L	K	G	L	N	T	H	K	G	R	L	T	H	P	G	V	A	E	A	F	G	L	P	Y	T	P	P	E	E	A	L	R	G
Template Known Secondary structure					T	T					T						T	T					T	T												T			B								T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions