Job Description P52643 Confidence 99.96% Date Thu Jan 5 12:05:56 GMT 2012 Rank 44 Aligned Residues 246 % Identity 17% Template c2bruB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase subunit alpha; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase Resolution UNK

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.							.	.	.	.	.	.	.	40										.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.									.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.									.	.	.	.	.	.	.	.	.
Query Sequence		K	Y	L	Q	Q	V	N	E	S	F	G	F	E	L	E	F	F	D	F	.	.	.	.	.	.	L	L	T	E	K	T	A	K	.	.	.	.	.	.	.	.	.	T	A	N	G	C	E	A	V	C	I	F	V	N	D	D	G	S	R	P	V	L	E	E	L	K	K	H	G	V	K	Y	I	A	L	R	C	A	G
Query Conservation																					.	.	.	.	.	.									.	.	.	.	.	.	.	.	.
Alig confidence										.											.	.	.	.	.	.									.	.	.	.	.	.	.	.	.							.																				.	.
Template Conservation										.																																								.																				.	.
Template Sequence		K	T	V	E	Q	L	L	K	.	L	G	F	T	V	A	V	E	S	G	A	G	Q	L	A	S	F	D	D	K	A	F	V	Q	A	G	A	E	I	V	E	G	N	S	V	W	Q	S	E	.	I	I	L	K	V	N	A	P	L	D	D	E	I	A	L	L	N	P	G	.	.	T	T	L	V	S	F	I	W	P	A
Template Known Secondary structure										.	T	T							T	T					T	T	S		S							T						S	G	G	G	G	S	S	S	.					S	S												S		.	.									T	T
Template Predicted Secondary structure										.																																								.																				.	.
Template SS confidence
		1021	.	.	.	.	.	.	.		.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.		.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.			.	.	.	1090	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																.	.																																	.
Query SS confidence																																.	.																																	.
Query Sequence		F	N	N	V	D	L	D	A	A	K	E	L	G	L	K	V	V	R	V	P	A	Y	D	P	E	A	V	A	E	H	.	.	A	I	G	M	M	M	T	L	N	R	R	I	H	R	A	Y	Q	R	T	R	D	A	N	F	S	L	E	G	L	T	G	F	.	T	M	Y	G	K	T	A	G	V	I	G	T	G	K	I
Query Conservation																																.	.																																	.
Alig confidence																																.	.																																	.
Template Conservation
Template Sequence		Q	N	P	E	L	M	Q	K	L	A	E	R	N	V	T	V	M	A	M	D	S	V	P	R	I	S	R	A	Q	S	L	D	A	L	S	S	M	A	N	I	A	G	Y	R	A	I	V	E	A	A	H	E	F	G	R	F	F	T	G	Q	I	T	A	A	G	K	V	P	P	A	K	V	M	V	I	G	A	G	V	A
Template Known Secondary structure		T											T	T						S	S					S																													S	S		S	S			B		S	S		B										S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1097	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190															.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																											.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		G	V	A	M	L	R	I	L	K	G	F	G	M	R	L	L	A	F	D	P	Y	P	S	A	A	.	.	A	L	E	L	G	V	E	Y	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	T	L	F	S	E	S	D	V	I	S	L	H	C	P	L	T	P	E	.	N	Y	H	L	L	N	E	A
Query Conservation																											.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence																											.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		G	L	A	A	I	G	A	A	N	S	L	G	A	I	V	R	A	F	D	T	R	P	E	V	K	E	Q	V	Q	S	M	G	A	E	F	L	E	L	D	M	S	D	A	F	I	K	A	E	M	E	L	F	A	A	Q	A	K	E	V	D	I	I	V	T	T	A	L	I	P	G	K	P	A	P	K	L	I	T	R	E
Template Known Secondary structure													T								S	S	T									T	T										T	T																	S								B	T	T	B						B
Template Predicted Secondary structure
Template SS confidence
		1177	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																	.	.																			.
Query SS confidence																	.	.																			.
Query Sequence		A	F	E	Q	M	K	N	G	V	M	I	V	N	T	S	.	.	R	G	A	L	I	D	S	Q	A	A	I	E	A	L	K	N	Q	K	.	I	G	S	L	G	M	D	V	Y	E	N	E
Query Conservation																	.	.																			.
Alig confidence																	.	.																			.
Template Conservation
Template Sequence		M	V	D	S	M	K	A	G	S	V	I	V	D	L	A	A	Q	N	G	G	N	C	E	Y	T	V	P	G	E	I	F	T	T	E	N	G	V	K	V	I	G	Y	T	D	L	P	G	R
Template Known Secondary structure				T	T	S		S	S						S	T	T	T	T	T		S	B	S	S			T	T	S					S	S	S							T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		1271	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions