Return to main results Retrieve Phyre Job Id

Job DescriptionP52643
Confidence96.85%DateThu Jan 5 12:05:56 GMT 2012
Rank310Aligned Residues110
% Identity14%Templatec2bmaA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:glutamate dehydrogenase (nadp+); PDBTitle: the crystal structure of plasmodium falciparum glutamate2 dehydrogenase, a putative target for novel antimalarial3 drugs
Resolution2.7 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   139140.........150.........160.........170.... .....180.........
Predicted Secondary structure 














.............................







Query SS confidence 



































. . . . . . . . . . . . . . . . . . . . . . . . . . . . .














Query Sequence  GFTMYGKTAGVIGTGKIGVAMLRILKGFGMRLLAFD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . PYPSAAALELGVEYV
Query Conservation     
 
  




 
 

  

  
  

  
    .............................               
Alig confidence 



































.............................














Template Conservation     
 
  




 



   
  
   








  
 



 


   
           
              
Template Sequence  NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF
Template Known Secondary structure  T

GGG

SSTT

TT
SS


TTTT

GGGGGGT
SS

Template Predicted Secondary structure 







































Template SS confidence 















































































   225....230.........240.........250.........260.........270.........280.........290.........300....
 
   190....... ..200.........210.........220...... ...230.........240.........250.....
Predicted Secondary structure 

.














..








Query SS confidence 







.




























. .




























Query Sequence  DLPTLFSE. SDVISLHCPLTPENYHLLNEAAFEQMKNG. . VMIVNTSRGALIDSQAAIEALKNQKIGSL
Query Conservation   
 


  .



 
  


  
  

    
  

 
..
 


  

 



 

  

  
 
 

Alig confidence 







.



...


..
















..















..










Template Conservation       
    


...


..
    

  

  
 
   







 
 
 

 ..  
  


 

Template Sequence  PNEKPWGVPCTLA. . . FPC. . ATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAI. . NLFKSNNIIYC
Template Known Secondary structure  SS

TTSS

S...
..SSTT
B
STT



SSS
B
..TT
Template Predicted Secondary structure 






...
..

















..


Template SS confidence 




































































   305....310....... ..320 .........330.........340.........350..... ....360......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions