Return to main results Retrieve Phyre Job Id

Job DescriptionP52643
Confidence100.00%DateThu Jan 5 12:05:56 GMT 2012
Rank15Aligned Residues303
% Identity34%Templatec1wwkA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:phosphoglycerate dehydrogenase; PDBTitle: crystal structure of phosphoglycerate dehydrogenase from pyrococcus2 horikoshii ot3
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  MKLAVYSTKQYDKKYLQQVNESFGFELEFFDFLLTEKTAKTANGCEAVCIFVNDDGSRPVLEELKKHGVKYIALRCAGFN
Query Conservation 



              
      

                  
 

           
       

 
     
 
Alig confidence 




..











.












































..












Template Conservation 




..           
.      
        
     
  

 

           
   
.. 

 
    

 
Template Sequence  MKVLV. . AAPLHEKAIQVL. KDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAP. . KLKVIARAGVGLD
Template Known Secondary structure 
..
S


.TT

SS

STT
SSS
S
B
TT
T..T

SSS

T
Template Predicted Secondary structure 
..



.





















..







Template SS confidence 















































































   1.... ....10....... ..20.........30.........40.........50.........60.. .......70.....
 
   81........90.........100.........110.........120.........130.........140.........150.........160
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  NVDLDAAKELGLKVVRVPAYDPEAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGVAML
Query Conservation   

       

 
 
        


  
   
 
 
             
         
 
  




 
 

  

Alig confidence 















































































Template Conservation   

        
 
 
  
     


  
   
   
                       
 
  




 
 

  

Template Sequence  NIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVA
Template Known Secondary structure  TB
T


GGGGTTTTT


TTT





TT


S
Template Predicted Secondary structure 































Template SS confidence 















































































   76...80.........90.........100.........110.........120.........130.........140.........150.....
 
   161........170......... 180.........190.........200.........210.........220.........230.........
Predicted Secondary structure 







.


























Query SS confidence 


















.



























































Query Sequence  RILKGFGMRLLAFDPYPSA. AALELGVEYVDLPTLFSESDVISLHCPLTPENYHLLNEAAFEQMKNGVMIVNTSRGALID
Query Conservation    
  

  
         .           
 


  



 
  


  
  

    
  

 

 


  

 


Alig confidence 


















.



























































Template Conservation    
  

  
    
                
 

   



   



  
  

    
  

 

 


  

  

Template Sequence  KIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVD
Template Known Secondary structure  TT

SS

TT



S



STTTTT
B
S
TT

S
GGGB
Template Predicted Secondary structure 









































Template SS confidence 















































































   156...160.........170.........180.........190.........200.........210.........220.........230.....
 
   240.........250.........260.........270.........280.........290.........300.........310.........
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  SQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVIQDDVFRRLSACHNVLFTGHQAFLTAEALTSISQTTLQNLSNLE
Query Conservation 
 

  

  
 
 





   

                   
    






 
  
             

    
Alig confidence 
























.............









































Template Conservation    

  

  
 
 

 


   

.............     

   


  


 
  
             

   
Template Sequence  TNALVKALKEGWIAGAGLDVFEEEP. . . . . . . . . . . . . LPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKIL
Template Known Secondary structure  TSSSS

SSSS.............

TT
GGGG
TT
SS
TT
S
Template Predicted Secondary structure 








.............















Template SS confidence 















































































   236...240.........250.........260 .........270.........280.........290.........300..
 
   320.
Predicted Secondary structure 

Query SS confidence 

Query Sequence  KG
Query Conservation   
Alig confidence 

Template Conservation   
Template Sequence  KG
Template Known Secondary structure  T
Template Predicted Secondary structure 

Template SS confidence 

   303.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions