Job Description P52643 Confidence 99.95% Date Thu Jan 5 12:05:56 GMT 2012 Rank 49 Aligned Residues 295 % Identity 16% Template c1v8bA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structure of a hydrolase Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		K	L	A	V	Y	S	T	K	Q	Y	D	K	K	Y	L	Q	Q	V	N	E	S	F	G	F	E	L	E	F	F	D	F	.	.	.	L	L	T	E	K	T	A	K	T	A	N	G	C	E	A	V	C	I	F	V	N	D	D	G	S	R	P	V	L	E	E	L	K	K	H	G	V	K	Y	I	A	L	R	C	A	G
Query Conservation																																	.	.	.
Alig confidence																																	.	.	.
Template Conservation
Template Sequence		K	I	T	G	C	L	H	M	T	V	E	C	A	L	L	I	E	T	L	Q	K	L	G	A	Q	I	R	W	C	S	C	N	I	Y	S	T	A	D	Y	A	A	A	A	V	S	T	L	E	N	V	T	V	F	A	W	K	N	E	T	L	E	E	Y	W	W	C	V	E	S	A	L	T	W	G	D	G	D	D	N	G
Template Known Secondary structure							S			S													T	T								S	S	S	S											T	T	S	T	T							T	T																	S	S	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	N	N	V	D	L	D	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	D	M	I	V	D	D	G	G	D	A	T	L	L	V	H	K	G	V	E	Y	E	K	L	Y	E	E	K	N	I	L	P	D	P	E	K	A	K	N	E	E	E	R	C	F	L	T	L	L	K	N	S	I	L	K	N	P	K	K	W	T	N	I	A	K	K	I	I	G	V	S	E	E	T	T	T	G	V	L	R
Template Known Secondary structure			S					S	S	S																									G	G	G		S	S															T	T		T	T							T	T								S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
									88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	K	E	L	G	L	K	V	V	R	V	P	A	Y	D	P	E	A	V	A	E	H	A	I	G	M	M	M	T	L	N	R	R	I	H	R	A	Y	Q	R	T	R	D	A	N	F	S	L	E	G	L	T	G	F	T	M	Y	G	K	T	A	G	V	I	G	T	G	K	I	G	V	A	M	L
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	K	M	D	K	Q	N	E	L	L	F	T	A	I	N	V	N	D	A	V	T	K	Q	K	Y	D	N	V	Y	G	C	R	H	S	L	P	D	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	R	A	T	D	F	L	I	S	G	K	I	V	V	I	C	G	Y	G	D	V	G	K	G	C	A
Template Known Secondary structure								T	T				S						T	T	S					T	T															.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	S								S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.															.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		R	I	L	K	G	F	G	M	R	L	L	A	F	D	P	Y	P	S	A	A	.	.	A	L	E	L	G	V	E	Y	V	D	L	P	T	L	F	S	E	S	D	V	I	S	L	H	C	P	L	T	P	E	N	Y	H	L	L	N	E	A	A	F	E	Q	M	K	N	G	V	M	I	V	N	T	S	R	G	A	L	I
Query Conservation																						.	.
Alig confidence																						.	.																											.	.	.	.																							.	.
Template Conservation																																																		.	.	.	.																							.	.
Template Sequence		S	S	M	K	G	L	G	A	R	V	Y	I	T	E	I	D	P	I	C	A	I	Q	A	V	M	E	G	F	N	V	V	T	L	D	E	I	V	D	K	G	D	F	F	I	T	C	T	G	.	.	.	.	N	V	D	V	I	K	L	E	H	L	L	K	M	K	N	N	A	V	V	G	N	I	.	.	G	H	F	D
Template Known Secondary structure								T								S										T	T	T										T	T	T		S							S	.	.	.	.	S	S	S	S	B						T	T			T	T							.	.	S	S	T	T
Template Predicted Secondary structure																																																		.	.	.	.																							.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.					.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.			.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.						.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.
Query Sequence		D	S	Q	A	A	I	E	A	L	K	N	Q	K	I	G	S	L	G	M	D	V	Y	E	N	E	R	D	L	F	F	E	D	K	S	N	D	V	I	Q	D	D	V	F	R	R	L	S	.	.	.	.	.	A	C	H	N	V	L	F	T	G	H	Q	A	F	L	T	A	E	A	L	T	S	I	S	Q	T	T	L	Q
Query Conservation																																																	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	I	Q	V	N	E	L	F	N	Y	K	G	I	H	I	E	N	V	K	P	Q	V	D	R	I	T	.	.	.	.	.	.	.	.	.	.	.	.	L	P	N	G	N	K	I	I	V	L	A	R	G	R	L	L	N	L	G	C	A	T	G	H	P	A	F	V	M	S	F	S	F	C	N	Q	T	F	A	Q	L
Template Known Secondary structure		T	S	B							T	S	T	T								T	T						.	.	.	.	.	.	.	.	.	.	.	.		T	T	S							G	G	G	S	B					S	S			S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.													.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	S	N	L	E	K	G	E	T	C	P	N	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	W	Q	N	K	D	T	N	K	Y	E	N	K	V
Template Known Secondary structure						T	T	T	S	S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions