Job Description P52643 Confidence 99.97% Date Thu Jan 5 12:05:56 GMT 2012 Rank 43 Aligned Residues 276 % Identity 15% Template c1pjcA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protein (l-alanine dehydrogenase); PDBTitle: l-alanine dehydrogenase complexed with nad Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.										.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.							.	.	.	.	.	.											40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	L	A	V	Y	S	T	K	Q	Y	D	K	.	.	.	.	.	.	.	.	.	K	Y	L	Q	Q	V	N	E	S	F	G	F	E	L	E	F	F	D	F	L	.	.	.	.	.	.	L	T	E	K	T	A	.	.	.	.	.	.	.	.	.	.	K	T	A	N	G	C	E	A	V	C	I	F	V	N	D	D
Query Conservation															.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.							.	.	.	.	.	.	.	.	.										.											.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.								.
Template Conservation							.	.																									.																																								.
Template Sequence		M	E	I	G	V	.	.	P	K	E	I	K	N	Q	E	F	R	V	G	L	S	P	S	S	V	R	T	L	V	E	A	.	G	H	T	V	F	I	E	T	Q	A	G	I	G	A	G	F	A	D	Q	D	Y	V	Q	A	G	A	Q	V	V	P	S	A	K	D	A	W	S	R	E	.	M	V	V	K	V	K	E	P
Template Known Secondary structure							.	.					S	T	T					S											T	T	.	T							T	T	T	T	G	G	G	T										T					S	S						T	S	S	.					S	S
Template Predicted Secondary structure							.	.																									.																																								.
Template SS confidence
		1	.	.	.	.			.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	R	P	V	L	E	E	L	K	K	H	G	V	K	Y	I	A	L	R	C	A	G	F	N	N	V	D	L	D	A	A	K	E	L	G	L	K	V	V	R	V	P	A	Y	D	P	E	A	V	A	E	H	A	I	G	M	M	M	T	L	N	R	R	I	H	R	A	Y	Q	R	T	R	D	A	N	F	S	L	E
Query Conservation
Alig confidence												.	.
Template Conservation												.	.
Template Sequence		L	P	A	E	Y	D	L	M	Q	K	.	.	D	Q	L	L	F	T	Y	L	H	L	A	A	A	R	E	L	T	E	Q	L	M	R	V	G	L	T	A	I	A	Y	E	T	V	E	L	P	N	R	S	L	P	L	L	T	P	M	S	I	I	A	G	R	L	S	V	Q	F	G	A	R	F	L	E	R	Q	Q	G	G
Template Known Secondary structure			G	G	G	G	G	G			T	.	.	T									G	G	G												T						G	G	G				T	T	S			T	T	T																			T	S	G	G	G	T	S
Template Predicted Secondary structure												.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		136	.	.	.	140					.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.											.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure							.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	T	G	F	.	.	.	.	T	M	Y	G	K	T	A	G	V	I	G	T	G	K	I	G	V	A	M	L	R	I	L	K	G	F	G	M	R	L	L	A	F	D	P	Y	P	S	.	.	.	.	.	.	.	.	.	.	A	A	A	L	E	L	G	V	E	Y	V	D	L	P	T	L	F	S	E	S	D	V	I
Query Conservation							.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	V	L	L	G	G	V	P	G	V	K	P	G	K	V	V	I	L	G	G	G	V	V	G	T	E	A	A	K	M	A	V	G	L	G	A	Q	V	Q	I	F	D	I	N	V	E	R	L	S	Y	L	E	T	L	F	G	S	R	V	E	L	L	Y	S	N	S	A	E	I	E	T	A	V	A	E	A	D	L	L
Template Known Secondary structure						T	T		B	T	T	B											S													T	T								S													G	G	G	S																T		S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		202	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure						.																													.	.
Query SS confidence						.																													.	.
Query Sequence		S	L	H	C	.	P	L	T	P	E	N	Y	H	L	L	N	E	A	A	F	E	Q	M	K	N	G	V	M	I	V	N	T	S	.	.	R	G	A	L	I	D	S	Q	A	A	I	E	A	L	K	N	Q	K	I	G	S	L	G	M	D	V	Y	E	N	E	R	D	L	F	F	E	D	K	S	N	D	V	I	Q	D
Query Conservation						.																													.	.
Alig confidence						.																													.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	A	V	L	V	P	G	R	R	A	P	I	L	V	P	A	S	L	V	E	Q	M	R	T	G	S	V	I	V	D	V	A	V	D	Q	G	G	C	V	E	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Known Secondary structure								T	T	S	S					B						T	T	S		T	T						T	T		T	T			S	B	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.																						.	.														280
		279	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		D	V	F	R	R	L	S	A	C	H	N	V	L	F	.	.	T	G	H	Q	A	F	L	T	A	E	A	L	T	S	I	S	Q	T	T	L	Q	N	L	S	N	L	E
Query Conservation																.	.
Alig confidence																.	.										.	.	.
Template Conservation																											.	.	.
Template Sequence		S	H	T	Q	P	T	Y	E	V	F	G	V	V	H	Y	G	V	P	N	M	P	G	A	V	P	.	.	.	W	T	A	T	Q	A	L	N	N	S	T	L	P	Y	V
Template Known Secondary structure			S	S	S						T	T							S		G	G	G	G			.	.	.
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.				.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions