Job Description P52643 Confidence 100.00% Date Thu Jan 5 12:05:56 GMT 2012 Rank 39 Aligned Residues 313 % Identity 14% Template c1l7eC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinamide nucleotide transhydrogenase, PDBTitle: crystal structure of r. rubrum transhydrogenase domain i2 with bound nadh Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.								10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																		.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.
Predicted Secondary structure											.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query SS confidence											.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query Sequence		M	K	L	A	V	Y	S	T	K	.	.	.	.	.	.	.	Q	Y	D	K	K	Y	L	Q	Q	V	N	E	S	F	G	F	E	L	E	F	F	D	F	L	L	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	A	K	T	A	N	G	C	E	A	V	C	I	.	.	.	.	F	V
Query Conservation											.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Alig confidence											.	.	.	.	.	.	.														.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation																															.
Template Sequence		M	K	I	A	I	P	K	E	R	R	P	G	E	D	R	V	A	I	S	P	E	V	V	K	K	L	V	G	L	.	G	F	E	V	I	V	E	Q	G	A	G	V	G	A	S	I	T	D	D	A	L	T	A	A	G	A	T	I	A	S	T	A	A	Q	A	L	S	Q	A	D	V	V	W	K	V	Q	R	P	M	T
Template Known Secondary structure											S	T	T					S												T	.	T							T	T	T	T	G	G	G	T									T	T					S	S						T	T		S
Template Predicted Secondary structure																															.
Template SS confidence
		801	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.		830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		N	D	D	G	S	R	P	V	L	E	E	L	K	K	H	G	V	K	Y	I	A	L	R	C	A	G	F	N	N	V	D	L	D	A	A	K	E	L	G	L	K	V	V	R	V	P	A	Y	D	P	E	A	V	A	E	H	.	.	A	I	G	M	M	M	T	L	N	R	R	I	H	R	A	Y	Q	R	T	R	D	A
Query Conservation																																																										.	.
Alig confidence															.	.																																										.	.
Template Conservation															.	.
Template Sequence		A	E	E	G	T	D	E	V	A	L	I	K	E	.	.	G	A	V	L	M	C	H	L	G	A	L	T	N	R	P	V	V	E	A	L	T	K	R	K	I	T	A	Y	A	M	E	L	M	P	R	I	S	R	A	Q	S	M	D	I	L	S	S	Q	S	N	L	A	G	Y	R	A	V	I	D	G	A	Y	E	F	A
Template Known Secondary structure		G	G	G	S	S		S	G	G	G	S		T	.	.	T									G	G	G		S									T	T						G	G	G					G	G	G	T	T	T																							S
Template Predicted Secondary structure															.	.
Template SS confidence
		880	.	.	.	.	.	.	.	.	.	890	.	.			.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure													.																																								.	.											.	.	.	.
Query SS confidence													.																																								.	.											.	.	.	.
Query Sequence		N	F	S	L	E	G	L	T	G	F	T	.	M	Y	G	K	T	A	G	V	I	G	T	G	K	I	G	V	A	M	L	R	I	L	K	G	F	G	M	R	L	L	A	F	D	P	Y	P	S	A	A	.	.	A	L	E	L	G	V	E	Y	V	D	.	.	.	.	L	P	T	L	F	S	E	S	D	V	I	S	L
Query Conservation													.																																								.	.											.	.	.	.
Alig confidence													.																																								.	.											.	.	.	.
Template Conservation
Template Sequence		R	A	F	P	M	M	M	T	A	A	G	T	V	P	P	A	R	V	L	V	F	G	V	G	V	A	G	L	Q	A	I	A	T	A	K	R	L	G	A	V	V	M	A	T	D	V	R	A	A	T	K	E	Q	V	E	S	L	G	G	K	F	I	K	Q	A	E	A	V	L	K	E	L	V	K	T	D	I	A	I	T
Template Known Secondary structure		S		S	S					S	S														S													T	T								S	S	T	T	S					T	T	T	T															T	T		S
Template Predicted Secondary structure
Template SS confidence
		958	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.
		204	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure						.																											.	.
Query SS confidence						.																											.	.
Query Sequence		H	C	P	L	.	T	P	E	N	Y	H	L	L	N	E	A	A	F	E	Q	M	K	N	G	V	M	I	V	N	T	S	.	.	R	G	A	L	I	D	S	Q	A	A	I	E	A	L	K	N	Q	K	I	G	S	L	G	M	D	V	Y	E	N	E	R	D	L	F	F	E	D	K	S	N	D	V	I	Q	D	D	V
Query Conservation						.																											.	.
Alig confidence						.																											.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	L	I	P	G	K	P	A	P	V	L	I	T	E	E	M	V	T	K	M	K	P	G	S	V	I	I	D	L	A	V	E	A	G	G	N	C	P	L	S	E	P	G	K	I	V	V	K	H	G	V	K	I	V	G	H	T	N	V	P	S	R	V	A	.	.	.	.	.	.	.	.	.	.	.	.	A	D	A
Template Known Secondary structure						T	T	S						S							T	S		T	T						T	T	G	G	G	T		S	S	T	T			T	T						T	T							S		G	G	G	G	G		.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1064	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.													.	1130	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	R	L	S	A	C	H	N	V	L	F	T	G	H	Q	A	F	L	T	A	E	A	L	T	S	I	S	Q	T	T	L	Q	N	L	S	N	L	E	K	G	E	T	C	P	N	E	L	V
Query Conservation
Alig confidence																																												.
Template Conservation																																												.
Template Sequence		S	P	L	F	A	K	N	L	L	N	F	L	T	P	H	V	D	K	D	T	K	T	L	V	M	K	L	E	D	E	T	V	S	G	T	C	V	T	R	D	G	A	.	I	V	H	P	A	L
Template Known Secondary structure														G	G	G			T	T	T	T						T	T	S											T	T		.			S
Template Predicted Secondary structure																																												.
Template SS confidence
		1132	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.		.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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