Job Description P52643 Confidence 100.00% Date Thu Jan 5 12:05:56 GMT 2012 Rank 2 Aligned Residues 327 % Identity 32% Template c1dxyA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:d-2-hydroxyisocaproate dehydrogenase; PDBTitle: structure of d-2-hydroxyisocaproate dehydrogenase Resolution 1.86 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	L	A	V	Y	S	T	K	Q	Y	D	K	K	Y	L	Q	Q	V	N	E	S	F	G	F	E	L	E	F	F	D	F	L	L	T	E	K	T	A	K	T	A	N	G	C	E	A	V	C	I	F	V	N	D	D	G	S	R	P	V	L	E	E	L	K	K	H	G	V	K	Y	I	A	L	R	C	A	G	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	I	I	A	Y	G	A	R	V	D	E	I	Q	Y	F	K	Q	W	A	K	D	T	G	N	T	L	E	Y	H	T	E	F	L	D	E	N	T	V	E	W	A	K	G	F	D	G	I	N	S	L	Q	T	T	P	Y	A	A	G	V	F	E	K	M	H	A	Y	G	I	K	F	L	T	I	R	N	V	G	T	D
Template Known Secondary structure								S			T	T	T																			S	S				T	T	G	G	G	G	G	T	T		S							S	S		B											T	T							S	S	S			T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		N	V	D	L	D	A	A	K	E	L	G	L	K	V	V	R	V	P	A	Y	D	P	E	A	V	A	E	H	A	I	G	M	M	M	T	L	N	R	R	I	H	R	A	Y	Q	R	T	R	D	A	N	F	S	L	E	G	.	L	T	G	F	T	M	Y	G	K	T	A	G	V	I	G	T	G	K	I	G	V	A	M
Query Conservation																																																										.
Alig confidence																																																										.
Template Conservation
Template Sequence		N	I	D	M	T	A	M	K	Q	Y	G	I	R	L	S	N	V	P	A	Y	S	P	A	A	I	A	E	F	A	L	T	D	T	L	Y	L	L	R	N	M	G	K	V	Q	A	Q	L	Q	A	G	D	Y	E	K	A	G	T	F	I	G	K	E	L	G	Q	Q	T	V	G	V	M	G	T	G	H	I	G	Q	V	A
Template Known Secondary structure		T	B								T	T							T	T	S																		T	T										T	T						T							G	G	G	S								S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	I	L	K	G	F	G	M	R	L	L	A	F	D	P	Y	P	S	A	A	A	L	E	L	G	V	E	Y	V	D	L	P	T	L	F	S	E	S	D	V	I	S	L	H	C	P	L	T	P	E	N	Y	H	L	L	N	E	A	A	F	E	Q	M	K	N	G	V	M	I	V	N	T	S	R	G	A	L	I	D
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence		I	K	L	F	K	G	F	G	A	K	V	I	A	Y	D	P	Y	P	M	K	G	.	D	H	P	D	F	D	Y	V	S	L	E	D	L	F	K	Q	S	D	V	I	D	L	H	V	P	G	I	E	Q	N	T	H	I	I	N	E	A	A	F	N	L	M	K	P	G	A	I	V	I	N	T	A	R	P	N	L	I	D
Template Known Secondary structure								T	T								S	S			S	S	.			T	T														S										G	G	G	T	T	S	B								S		T	T							S		T	T	S	B
Template Predicted Secondary structure																							.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	A	A	I	E	A	L	K	N	Q	K	I	G	S	L	G	M	D	V	Y	E	N	E	R	D	L	F	F	E	D	K	S	N	D	V	I	Q	D	D	V	F	R	R	L	S	A	C	H	N	V	L	F	T	G	H	Q	A	F	L	T	A	E	A	L	T	S	I	S	Q	T	T	L	Q	N	L	S	N	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Q	A	M	L	S	N	L	K	S	G	K	L	A	G	V	G	I	D	T	Y	E	Y	E	T	E	D	L	L	N	L	A	K	H	G	S	F	K	D	P	L	W	D	E	L	L	G	M	P	N	V	V	L	S	P	H	I	A	Y	Y	T	E	T	A	V	H	N	M	V	Y	F	S	L	Q	H	L	V	D	F	L
Template Known Secondary structure											T	T	S							S	S		T	T												S	S											T		T	T					S	S		T	T		S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	E	T	C	P	N	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	G	E	T	S	T	E	V
Template Known Secondary structure				S			T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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