Job Description P36929 Confidence 69.57% Date Thu Jan 5 11:53:58 GMT 2012 Rank 378 Aligned Residues 87 % Identity 10% Template c3trkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:nonstructural polyprotein; PDBTitle: structure of the chikungunya virus nsp2 protease Resolution 2.40 Å

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		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	Y	P	S	Q	W	C	G	E	Q	Q	F	D	R	I	L	L	D	A	P	C	S	A	T	G	V	I	R	R	H	P	D	I	K	W	L	R	R	D	R	D	I	P	E	L	A	Q	L	Q	S	E	I	L	D	A	I	W	P	H	L	K	T	G	G	T	L	V	Y	A	T	C	S	V	L	P	E	E	N	S
Query Conservation
Alig confidence																							.	.	.	.	.					.	.	.	.	.	.
Template Conservation																							.	.	.	.	.					.	.	.	.	.	.
Template Sequence		N	L	E	L	G	L	P	A	T	L	G	R	Y	D	L	V	V	I	N	I	H	.	.	.	.	.	T	P	F	R	.	.	.	.	.	.	I	H	H	Y	Q	Q	C	V	D	H	A	X	K	L	Q	X	L	G	G	D	S	L	R	L	L	K	P	G	G	S	L	L	I	R	A	Y	G	Y	A	D	R	T	S	E
Template Known Secondary structure			G	G	G				G	G	G												.	.	.	.	.					.	.	.	.	.	.	S	S																			G	G	G	G																S
Template Predicted Secondary structure																							.	.	.	.	.					.	.	.	.	.	.
Template SS confidence
		1202	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.						.	.	.	.							.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	I	K	A	F	L	Q	R	T	A	D	A	E	L	C	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	I	C	V	L	G	R	K	F	R	S	S	R	A	L	K	P
Template Known Secondary structure									T	T
Template Predicted Secondary structure
Template SS confidence
		1271	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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