Job Description P36929 Confidence 94.27% Date Thu Jan 5 11:53:58 GMT 2012 Rank 350 Aligned Residues 148 % Identity 18% Template c3ps9A_ PDB info PDB header:transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of mnmc from e. coli Resolution 2.54 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		233	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270													.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure													.																												.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query SS confidence													.																												.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query Sequence		A	S	A	Q	G	C	M	T	W	L	A	.	P	Q	N	G	E	H	I	L	D	L	C	A	A	P	G	G	K	T	T	H	I	L	E	V	A	P	E	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	V	V	A	V	D	I	D	E	Q	R	L	S	R	V	Y	D	N	L	K	R	L	.	.	.	.	.	.
Query Conservation													.																												.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Alig confidence													.																												.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	N	Q	L	E	V	R	F	P	E	H	P	H	P	L	F	V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W
Template Known Secondary structure		G	G	G	T					G	G	G		S	S	S										T	T	S																		T	T	S	S											S	S												T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
																									294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	K	A	T	V	K	Q	G	D	G	R	Y	P	S	Q	W	C	.	.	.	G	E	Q	Q	F	D	R	I	L	L	D	A	P	C	S	A	T	G	V	I	R	R	H	P	D	I	K	W	L	R	R	D	R	D	I	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.														.	.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.											.	.	.	.	.	.	.	.
Template Sequence		A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R	L	L	L	D	A	G	R	V	T	L	D	L	W	F	G	D	I	N	E	L	T	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	.	.	.	.	.	A	P	A	K	N	P	D	M	W	T	.	.	.	.	.	.	.	.
Template Known Secondary structure														S								G	G	G	T								S						G	G	G	B		G	G	G	T	T										S	.	.	.	.	.		G	G	G		G	G	G	S		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.											.	.	.	.	.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180						.	.	.	.	.	.	.	.	.	190
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	A	Q	L	Q	S	E	I	L	D	A	I	W	P	H	L	K	T	G	G	T	L	V	Y	A	T	C	S	V	L	P	E	E	N	S	L	Q	I	K	A	F	L	Q	R	T	A	D	A	E	L	C	E	T	G	T	P	E	Q	P
Query Conservation
Alig confidence		.	.	.	.	.	.																								.	.	.	.	.	.	.										.
Template Conservation		.	.	.	.	.	.																								.	.	.	.	.	.	.										.
Template Sequence		.	.	.	.	.	.	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A	T	F	T	S	A	.	.	.	.	.	.	.	G	F	V	R	R	G	L	Q	D	.	A	G	F	T	M	Q	K	R	K	G	F	G	R	K
Template Known Secondary structure		.	.	.	.	.	.																				S				.	.	.	.	.	.	.										.		T									S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.																								.	.	.	.	.	.	.										.
Template SS confidence
								191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.								.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions