Job Description P36929 Confidence 97.16% Date Thu Jan 5 11:53:58 GMT 2012 Rank 313 Aligned Residues 136 % Identity 14% Template c3evaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rna-directed rna polymerase ns5; PDBTitle: crystal structure of yellow fever virus methyltransferase complexed2 with s-adenosyl-l-homocysteine Resolution 1.50 Å

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		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.														.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	N	G	E	H	I	L	D	L	C	A	A	P	G	G	K	T	T	H	I	L	E	V	A	P	E	A	Q	V	V	A	V	D	I	D	E	Q	R	L	S	R	V	Y	D	N	L	K	R	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	M	K	A	T	V	K	Q	G	D	G	R	Y	P	S	Q	W
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Sequence		V	K	L	E	G	R	V	I	D	L	G	C	G	R	G	G	W	C	Y	Y	A	A	A	Q	K	E	V	S	G	V	K	G	F	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	D	G	H	E	K	P	M	N	V	Q	S	L	G	W	N	I	I	T	F	K	D	K	T	D	I	H	.	R
Template Known Secondary structure		S										T		T	T									T	S	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T									B	T	T	G	G	G						S			T	T	.	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		C	G	E	Q	Q	F	D	R	I	L	L	D	A	P	C	S	A	T	G	V	I	R	R	H	P	D	I	K	W	L	R	R	D	R	D	I	P	E	L	A	Q	L	Q	S	E	I	L	D	A	I	W	P	H	L	.	K	T	G	G	T	L	V	Y	A	T	C	S	V	L	P	E	E	N	S	L	Q	I	K	A	F
Query Conservation																																																								.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	P	V	K	C	D	T	L	L	C	D	I	G	E	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	T	E	G	E	R	T	V	R	V	L	D	T	V	E	K	W	L	A	C	G	V	D	N	F	C	V	K	V	L	A	P	Y	M	P	D	V	L	E	K	L	E	L	L
Template Known Secondary structure		S						S											S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	T			S							S		T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.																	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	R	T	A	D	A	E	L	C	E	T	G	T	P	E	Q	P	G	K	Q	N	L
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		Q	R	R	F	G	G	.	T	V	I	R	N	P	L	S	R	N	S	T	H	E	M	Y
Template Known Secondary structure								.						T	T	S		T	T
Template Predicted Secondary structure								.
Template SS confidence
		199	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions