Job Description P36929 Confidence 34.87% Date Thu Jan 5 11:53:58 GMT 2012 Rank 447 Aligned Residues 127 % Identity 17% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.								.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.						.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.												.																												.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.												.																												.	.	.	.	.
Query Sequence		L	A	P	Q	N	G	E	H	I	L	D	L	C	A	A	P	G	G	K	T	T	H	I	L	E	V	.	.	.	.	.	.	.	A	P	E	A	Q	V	V	A	V	D	I	.	D	E	Q	R	L	S	R	V	Y	D	N	L	K	R	L	G	M	K	A	T	V	K	Q	G	D	G	R	.	.	.	.	.	Y	P	S
Query Conservation																												.	.	.	.	.	.	.												.																												.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.												.																												.	.	.	.	.
Template Conservation
Template Sequence		L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E
Template Known Secondary structure				S	S	S										S	S	S	S	T	T																							S				T	T	G	G	G	S	S							S	S							S	S	S			S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	W	C	G	E	Q	Q	F	D	R	I	L	L	D	A	P	C	S	A	T	G	V	I	R	R	H	P	D	I	K	W	L	R	R	D	R	D	I	P	E	L	A	Q	L	Q	S	E	I	L	D	A	I	W	P	H	L	K	T	G	G	T	L	V	Y	A	T	C	S	V	L	P	E	E	N	S	L	Q	I	K	A
Query Conservation
Alig confidence																.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Sequence		G	M	E	K	F	K	K	A	D	V	L	I	I	D	.	.	.	.	T	A	G	R	H	K	E	E	K	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	.	Q	Q	A	G	I	Q	A	K	A
Template Known Secondary structure					T	T	S	S		S						.	.	.	.				S		S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S	S	S			S								G	G	G	G	.	G	G
Template Predicted Secondary structure																.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.					.	190	.	.	.	.	.	.	.	.	.																	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.
		389
Predicted Secondary structure
Query SS confidence
Query Sequence		F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		234

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions