Job Description P36929 Confidence 23.57% Date Thu Jan 5 11:53:58 GMT 2012 Rank 491 Aligned Residues 130 % Identity 18% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.								.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.												.																																			.
Query SS confidence																												.	.	.	.	.	.	.												.																																			.
Query Sequence		L	A	P	Q	N	G	E	H	I	L	D	L	C	A	A	P	G	G	K	T	T	H	I	L	E	V	.	.	.	.	.	.	.	A	P	E	A	Q	V	V	A	V	D	I	.	D	E	Q	R	L	S	R	V	Y	D	N	L	K	R	L	G	M	K	A	T	V	K	Q	G	D	G	R	Y	P	S	Q	W	C	G	.
Query Conservation																												.	.	.	.	.	.	.												.																																			.
Alig confidence																												.	.	.	.	.	.	.												.																																			.
Template Conservation
Template Sequence		W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G
Template Known Secondary structure						S	S								S	T	T	S	S															T	T											S	S	S														T										S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
							313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	E	Q	Q	F	D	R	I	L	L	D	A	P	C	S	A	T	G	V	I	R	R	H	P	D	I	K	W	L	R	R	D	R	D	I	P	E	L	A	Q	L	Q	S	E	I	L	D	A	I	W	P	H	L	K	T	G	G	T	L	V	Y	A	T	C	S	V	L	P	E	E	N	S	L	Q	I	K
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.											.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	.	.	.	.	T	S	G	R	H	K	Q	E	D	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	Q	.	A	C	E	A	Q	A	K
Template Known Secondary structure								T	T								.	.	.	.						T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														S								T	T			T	.	T
Template Predicted Secondary structure																	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.																	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.
		388	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	L	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	K	D	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions