Job Description P36929 Confidence 100.00% Date Thu Jan 5 11:53:58 GMT 2012 Rank 4 Aligned Residues 278 % Identity 26% Template c2frxD_ PDB info PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli Resolution 2.90 Å

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		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	S	W	L	L	K	R	L	Q	K	A	Y	P	E	Q	W	Q	S	I	V	E	A	N	N	Q	R	P	P	M	W	L	R	I	N	R	T	H	H	S	R	D	S	W	L	A	L	L	D	E	A	G	M	K	G	F	P	H	A	D	Y	P	D	A	V	R	L	E	T	P	A	P	V	H	A	L	P	G	F	E
Query Conservation
Alig confidence													.	.																																																						.	.	.	.	.
Template Conservation													.	.																																																						.	.	.	.	.
Template Sequence		F	P	D	A	F	L	T	Q	X	R	E	.	.	A	X	P	F	D	D	F	L	A	A	C	Q	R	P	L	R	R	S	I	R	V	N	T	L	K	I	S	V	A	D	F	L	Q	L	T	A	P	Y	G	W	T	L	T	P	I	P	W	C	E	E	G	F	W	.	.	.	.	.	P	L	G	S	T	A	E	H	L
Template Known Secondary structure											T	T	.	.	S											T	S										T	T	T											G	G	G								T	T							.	.	.	.	.		G	G	G	S
Template Predicted Secondary structure													.	.																																																						.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																				.	.																									.
Query SS confidence																				.	.																									.
Query Sequence		D	G	W	V	T	V	Q	D	A	S	A	Q	G	C	M	T	W	L	.	.	A	P	Q	N	G	E	H	I	L	D	L	C	A	A	P	G	G	K	T	T	H	I	L	E	.	V	A	P	E	A	Q	V	V	A	V	D	I	D	E	Q	R	L	S	R	V	Y	D	N	L	K	R	L	G	M	K	A	T	V	K	Q
Query Conservation																				.	.																									.
Alig confidence																				.	.																									.
Template Conservation
Template Sequence		S	G	L	F	Y	I	Q	E	A	S	S	X	L	P	V	A	A	L	F	A	D	G	N	A	P	Q	R	V	X	D	V	A	A	A	P	G	S	K	T	T	Q	I	S	A	R	X	N	N	E	G	A	I	L	A	N	E	F	S	A	S	R	V	K	V	L	H	A	N	I	S	R	C	G	I	S	N	V	A	L	T
Template Known Secondary structure		T	T	S																	T	T	T				S					S	S		T	T	S										T	T	T		S							S	S															T			S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	G	R	Y	P	S	Q	W	C	G	E	Q	Q	F	D	R	I	L	L	D	A	P	C	S	A	T	G	V	I	R	R	H	P	D	I	K	W	L	R	R	D	R	D	I	P	E	L	A	Q	L	Q	S	E	I	L	D	A	I	W	P	H	L	K	T	G	G	T	L	V	Y	A	T	C	S	V	L	P	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	F	D	G	R	V	F	G	A	A	V	P	E	X	F	D	A	I	L	L	D	A	P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	L	I	D	S	A	F	H	A	L	R	P	G	G	T	L	V	Y	S	T	C	T	L	N	Q	E	E
Template Known Secondary structure					S	T	T					S	T	T														G	G	G	G	G	T		T	T	S	S	S	S																							T												S			S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.		.	.	.	.	400	.	.	.	.	.	.										.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.												.	.	.	.	.	.	.	.	.
Query SS confidence																.												.	.	.	.	.	.	.	.	.
Query Sequence		N	S	L	Q	I	K	A	F	L	Q	R	T	A	D	.	A	E	L	C	E	T	G	T	P	E	Q	.	.	.	.	.	.	.	.	.	P	G	K	Q	N	L	P	G	A	E	E	G	D	G	F	F	Y	A	K	L	I	K	K
Query Conservation																.												.	.	.	.	.	.	.	.	.
Alig confidence																.												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	E	A	V	C	L	W	L	K	E	T	Y	P	D	A	V	E	F	L	P	L	G	D	L	F	P	G	A	N	K	A	L	T	E	E	G	F	L	H	V	F	P	Q	I	Y	D	C	E	G	F	F	V	A	R	L	R	K	T
Template Known Secondary structure		T											S	T	T	T							T	T	S	S	T	T	G	G	G	G	B		T	T	S						T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions