Job Description P25748 Confidence 99.91% Date Thu Jan 5 11:42:36 GMT 2012 Rank 57 Aligned Residues 269 % Identity 19% Template d1gcaa_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.70

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		S	D	T	I	G	V	V	V	M	D	V	S	D	A	F	F	G	A	L	V	K	A	V	D	L	V	A	Q	Q	H	.	Q	K	Y	V	L	I	G	N	S	Y	H	E	A	E	K	E	R	H	A	I	E	V	L	I	R	Q	R	C	N	A	L	I	V	H	S	K	A	L	S	D	D	E	L	A	Q	F	M	D	N
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	K	D	G	K	S	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A	R
Template Known Secondary structure										S		T	T																	T	S	T	T									T	T															T	T		S							S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.									.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.													.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	P	G	M	V	L	I	N	R	V	V	P	G	Y	.	.	.	.	.	.	.	.	A	H	R	C	V	C	L	D	N	L	S	G	A	R	M	A	T	R	M	L	L	N	N	G	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	R	I	G	Y	L	S	S	S	H	G	I	E	D	D	A	M	R	K	A	G
Query Conservation																.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	V	I	Q	G	D	L	I	A	K	H	W	Q	A	N	Q	G	W	D	L	N	K	D	G	K	I	Q	Y	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R	T	T	Y
Template Known Secondary structure			T	T							S	S									T		T	T																											G	G	G		T	T		S	S	S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		W	M	S	A	L	K	E	Q	D	I	I	P	P	E	S	W	I	G	A	G	T	P	D	M	P	G	G	E	A	A	M	V	E	L	L	G	R	N	L	Q	L	T	.	.	A	V	F	A	Y	N	D	N	M	A	A	G	A	L	T	A	L	K	D	N	G	I	A	I	P	L	H	L	S	I	I	G	F	D	D	I
Query Conservation																																												.	.
Alig confidence																																												.	.																						.	.	.
Template Conservation																																																																			.	.	.
Template Sequence		V	V	K	E	L	N	D	K	G	I	Q	T	E	Q	L	A	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	.	.	K	S	S	I	P	V	F	G	V	D	A	L
Template Known Secondary structure									T	T												T	T														T	S	T	T	G	G	G							S	S														T	T	.	.	.		T	T	S					S	B
Template Predicted Secondary structure																																																																			.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.
		276	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.									.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure								.	.	.																																	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.																																	.	.	.	.	.	.	.	.
Query Sequence		P	I	A	R	Y	T	.	.	.	D	P	Q	L	T	T	V	R	Y	P	I	A	S	M	A	K	L	A	T	E	L	A	L	Q	G	A	A	G	N	I	D	P	.	.	.	.	.	.	.	.	R	A	S	H	C	F	M	P	T	L	V	R	R	H	S	V	A
Query Conservation								.	.	.																																	.	.	.	.	.	.	.	.
Alig confidence								.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	A	L	A	L	V	K	S	G	A	M	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	E	G	K	G	A	A	D	G	T	S	W	K	I	E	N	K	I	V	R	V	P	Y	V	G	V	D	K	D	N	L	S
Template Known Secondary structure											T	S	S		B																						T	T	S		T	T	T	T	S					B	T	T											T	T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions