Job Description P25748 Confidence 99.94% Date Thu Jan 5 11:42:36 GMT 2012 Rank 47 Aligned Residues 253 % Identity 16% Template d1byka_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.50

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	D	T	I	G	V	V	V	M	D	V	S	D	A	F	F	G	A	L	V	K	A	V	D	L	V	A	Q	Q	H	Q	K	Y	V	L	I	G	N	S	Y	H	E	A	E	K	E	R	H	A	I	E	V	L	I	R	Q	R	C	N	A	L	I	V	H	S	K	A	L	S	D	D	E	L	A	Q	F	M	D	N
Query Conservation
Alig confidence																																																																																.	.
Template Conservation																																																																																.	.
Template Sequence		S	D	K	V	V	A	I	I	V	T	R	L	D	S	L	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	G	Y	D	P	I	M	M	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F	T	G	I	T	E	E	M	L	A	H	W	.	.
Template Known Secondary structure											S		T	T																			T									T	T														T	T	T										T	T			T	T	T	S	G	G	G	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		I	P	G	M	V	L	I	N	R	V	V	P	G	Y	A	H	R	C	V	C	L	D	N	L	S	G	A	R	M	A	T	R	M	L	L	N	N	G	H	Q	R	I	G	Y	L	.	S	S	S	H	G	I	E	D	D	A	M	R	K	A	G	W	M	S	A	L	K	E	Q	D	I	I	P	P	E	S	W	I	G	A
Query Conservation																																															.
Alig confidence		.	.																																												.																												.	.	.	.	.
Template Conservation		.	.																																																																								.	.	.	.	.
Template Sequence		.	.	Q	S	S	L	V	L	L	A	R	D	A	K	G	F	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L	A	F	C	K	A	H	K	L	H	P	.	.	.	.	.	V	A
Template Known Secondary structure		.	.	S	S	S					S	S			S	S																						T	T											T	T	S	T	T	T	T														T	T				.	.	.	.	.
Template Predicted Secondary structure		.	.																																																																								.	.	.	.	.
Template SS confidence
				139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.						210	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	P	D	M	P	G	G	E	A	A	M	V	E	L	L	G	R	N	L	Q	L	T	A	V	F	A	Y	N	D	N	M	A	A	G	A	L	T	A	L	K	D	N	G	I	A	I	P	L	H	L	S	I	I	G	F	D	D	I	P	I	A	R	Y	T	D	P	Q	L	T	T	V	R	Y	P	I	A	S	M	A
Query Conservation
Alig confidence																																														.	.	.
Template Conservation																																														.	.	.
Template Sequence		A	L	P	G	L	A	M	K	Q	G	Y	E	N	V	A	K	V	I	T	P	E	T	T	A	L	L	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	.	.	.	I	D	T	L	Q	L	A	S	V	G	N	T	P	L	M	K	F	L	H	P	E	I	V	T	V	D	P	G	Y	A	E	A	G
Template Known Secondary structure						S									S	G	G	G			T	T							S	S														T	T	.	.	.			S																	T	T	S				B
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	A	T	E	L	A	L	Q	G	A	A	G	N	I	D	P	R	A	S	H	C	F	M	P	T	L
Query Conservation
Alig confidence																			.
Template Conservation																			.
Template Sequence		R	Q	A	A	C	Q	L	I	A	Q	V	T	G	R	S	E	P	.	Q	Q	I	I	I	P	A	T	L
Template Known Secondary structure													T	T	S				.								B
Template Predicted Secondary structure																			.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions