Job Description P25748 Confidence 99.62% Date Thu Jan 5 11:42:36 GMT 2012 Rank 74 Aligned Residues 258 % Identity 14% Template c3lftA_ PDB info PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a Resolution 1.35 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90						.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		S	D	T	I	G	V	V	V	M	D	V	S	D	A	F	F	G	A	L	V	K	A	V	D	L	V	A	Q	Q	H	Q	K	.	.	.	.	.	Y	V	L	I	G	N	S	Y	H	E	A	E	K	E	R	H	A	I	E	V	L	I	R	Q	R	C	N	A	L	I	V	H	S	K	A	L	S	D	D	E	L	A	Q
Query Conservation																																		.	.	.	.	.
Alig confidence							.																											.	.	.	.	.
Template Conservation							.
Template Sequence		N	A	K	I	G	.	V	L	Q	F	V	S	H	P	S	L	D	L	I	Y	K	G	I	Q	D	G	L	A	E	E	G	Y	K	D	D	Q	V	K	I	D	F	X	N	S	E	G	D	Q	S	K	V	A	T	X	S	K	Q	L	V	A	N	G	N	D	L	V	V	G	I	A	T	P	A	A	Q	G	L	A	S	A
Template Known Secondary structure							.					S																			T	T			G	G	G									T	T													T	T	S	S		S						S
Template Predicted Secondary structure							.
Template SS confidence
		50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.											.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.
Query Sequence		F	M	D	N	I	P	G	M	V	L	I	.	.	.	.	.	.	.	.	.	.	N	R	V	V	P	G	Y	A	H	R	C	V	C	L	D	N	L	S	G	A	R	M	A	T	R	M	L	L	N	N	G	H	Q	R	I	G	Y	L	S	S	S	H	G	I	E	D	D	A	M	R	K	A	G	W	M	S	A	L	K
Query Conservation													.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.																																							.
Template Conservation																																																													.
Template Sequence		T	K	D	L	P	V	I	X	A	A	I	T	D	P	I	G	A	N	L	V	K	D	L	K	K	P	G	G	N	V	T	G	V	S	D	H	N	P	A	Q	Q	Q	V	E	L	I	K	A	L	T	P	N	V	K	T	I	G	A	L	.	Y	S	S	S	E	D	N	S	K	T	Q	V	E	E	F	K	A	Y	A	E
Template Known Secondary structure			S	S	S						S		S		T	T	T	T	T	S		S		S	S				S	S																						T	T								.			T	T
Template Predicted Secondary structure																																																													.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	D	I	I	P	P	E	S	W	I	G	A	G	T	P	D	M	P	G	G	E	A	A	M	V	E	L	L	G	R	N	L	Q	L	T	A	V	F	A	Y	N	D	N	M	A	A	G	A	L	T	A	L	K	D	N	G	I	A	I	P	L	H	L	S	I	I	G	F	D	D	I	P	I	A	R	Y	T	D	P
Query Conservation
Alig confidence																	.	.	.	.	.	.	.																																								.	.														.	.	.
Template Conservation																	.	.	.	.	.	.	.																																								.	.														.	.	.
Template Sequence		K	A	G	L	T	V	E	T	F	A	V	P	S	T	N	.	.	.	.	.	.	.	E	I	A	S	T	V	T	V	X	T	S	K	V	D	A	I	W	V	P	I	D	N	T	I	A	S	G	F	P	T	V	V	S	S	N	Q	S	S	K	.	.	K	P	I	Y	P	S	A	T	A	X	V	E	V	.	.	.	G
Template Known Secondary structure			T	T									S	S	G	G	.	.	.	.	.	.	.	G									T	T	T		S						S							T								T	T	T	T		.	.						S	S					T	T	.	.	.	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.																																								.	.														.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.								.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.				.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		Q	L	T	T	V	R	Y	P	I	A	S	M	A	K	L	A	T	E	L	A	L	Q	G	A	A	G	N	I	.	.	D	P	R	A	S	H	C	F	M	P	T	L	V	R	R	H	S	V	A
Query Conservation																														.	.
Alig confidence																														.	.
Template Conservation
Template Sequence		G	L	A	S	V	V	I	D	Q	H	D	L	G	V	A	T	G	K	X	I	V	Q	V	L	K	G	A	K	P	A	D	T	P	V	N	V	F	S	T	G	K	S	V	I	N	K	K	I	A
Template Known Secondary structure																										T	T			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions