Job Description P25748 Confidence 99.85% Date Thu Jan 5 11:42:36 GMT 2012 Rank 65 Aligned Residues 253 % Identity 15% Template c3d02A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution Resolution 1.30 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.
Predicted Secondary structure																																						.																																.	.	.
Query SS confidence																																						.																																.	.	.
Query Sequence		D	T	I	G	V	V	V	M	D	V	S	D	A	F	F	G	A	L	V	K	A	V	D	L	V	A	Q	Q	H	Q	K	Y	V	L	I	G	.	N	S	Y	H	E	A	E	K	E	R	H	A	I	E	V	L	I	R	Q	R	C	N	A	L	I	V	H	S	K	A	L	.	.	.	S	D	D	E	L	A	Q	F	M
Query Conservation																																						.																																.	.	.
Alig confidence																																						.																																.	.	.
Template Conservation
Template Sequence		K	T	V	V	N	I	S	K	V	D	G	X	P	W	F	N	R	X	G	E	G	V	V	Q	A	G	K	E	F	N	L	N	A	S	Q	V	G	P	S	S	T	D	A	P	Q	Q	V	K	I	I	E	D	L	I	A	R	K	V	D	A	I	T	I	V	P	N	D	A	N	V	L	E	P	V	F	K	K	A	R	D
Template Known Secondary structure									S		S	S																		T	T									S	S	S															T	T		S							S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		D	N	I	P	G	M	V	L	I	N	R	V	V	P	G	Y	A	H	R	C	V	C	L	D	N	L	S	G	A	R	M	A	T	R	M	L	L	N	N	.	.	G	H	Q	R	I	G	Y	L	S	S	S	H	G	I	E	D	D	A	M	R	K	A	G	W	M	S	A	L	K	E	Q	D	I	I	P	P	E	S	W
Query Conservation																																									.	.
Alig confidence																																									.	.
Template Conservation
Template Sequence		A	G	I	V	V	L	T	N	E	S	P	G	Q	P	S	A	N	W	D	V	E	I	I	D	N	E	K	F	A	A	E	Y	V	E	H	X	A	K	R	X	G	G	K	G	G	Y	V	I	Y	V	G	S	L	T	V	P	Q	H	N	L	W	A	D	L	L	V	K	Y	Q	K	E	H	Y	P	D	X	H	E	V	T
Template Known Secondary structure		T	T							S		T	T		T	T		S					S	S																	T	T	T									S		S	S																				T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		214	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.				.	.	.	.	.
Predicted Secondary structure				.																																																																						.	.	.
Query SS confidence				.																																																																						.	.	.
Query Sequence		I	G	.	A	G	T	P	D	M	P	G	G	E	A	A	M	V	E	L	L	G	R	N	L	Q	L	T	A	V	F	A	Y	N	D	N	M	A	A	G	A	L	T	A	L	K	D	N	G	I	A	I	P	L	H	L	S	I	I	G	F	D	D	I	P	I	A	R	Y	T	D	P	Q	.	.	.	L	T	T	V	R
Query Conservation				.																																																																						.	.	.
Alig confidence				.																																																.	.																					.	.	.
Template Conservation																																																				.	.
Template Sequence		R	R	X	P	V	A	E	S	V	D	D	S	R	R	T	T	L	D	L	X	K	T	Y	P	D	L	K	A	V	V	S	F	G	S	N	G	P	I	G	A	G	R	A	V	K	E	K	R	A	K	.	.	N	K	V	A	V	Y	G	X	X	I	P	S	Q	A	A	S	L	I	K	S	G	D	I	T	E	G	I	T
Template Known Secondary structure		S		B	S		T	T																	T	T							S	S	T	T												T	T		T	.	.	T	T																			T	S	S
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	I	A	S	M	A	K	L	A	T	E	L	A	L	Q	G	A	A	G	N	I	D	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	P	A	T	A	G	Y	A	L	A	A	V	A	S	T	L	L	N	G	K	T	I	E	P
Template Known Secondary structure																				T	T					T
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions