Job Description P25748 Confidence 100.00% Date Thu Jan 5 11:42:36 GMT 2012 Rank 11 Aligned Residues 271 % Identity 23% Template c2o20H_ PDB info PDB header:transcription Chain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis Resolution 1.90 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	S	D	T	I	G	V	V	V	M	D	V	S	D	A	F	F	G	A	L	V	K	A	V	D	L	V	A	Q	Q	H	Q	K	Y	V	L	I	G	N	S	Y	H	E	A	E	K	E	R	H	A	I	E	V	L	I	R	Q	R	C	N	A	L	I	V	H	S	K	A	L	S	D	D	E	L	A	Q	F	M	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	T	T	T	V	G	V	I	L	P	T	I	T	S	T	Y	F	A	A	I	T	R	G	V	D	D	I	A	S	M	Y	K	Y	N	M	I	L	A	N	S	D	N	D	V	E	K	E	E	K	V	L	E	T	F	L	S	K	Q	V	D	G	I	V	Y	M	G	S	S	L	D	E	K	I	R	T	S	L	K	N
Template Known Secondary structure												S		T	T																		T	T									T	T															T	T		S						S	S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	P	G	M	V	L	I	N	R	V	V	P	G	Y	A	H	R	C	V	C	L	D	N	L	S	G	A	R	M	A	T	R	M	L	L	N	N	G	H	Q	R	I	G	Y	L	S	S	S	H	G	I	E	D	D	A	M	R	K	A	G	W	M	S	A	L	K	E	Q	D	I	I	P	P	E	S	W	I	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	T	P	V	V	L	V	G	T	I	D	G	D	K	E	I	P	S	V	N	I	D	Y	H	L	A	A	Y	Q	S	T	K	K	L	I	D	S	G	N	K	K	I	A	Y	I	M	G	S	L	K	D	V	E	N	T	E	R	M	V	G	Y	Q	E	A	L	L	E	A	N	I	E	F	D	E	N	L	V	F	E
Template Known Secondary structure			T							S				S	S	S		S																					T	T		S	S						S		T	T	S																	T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	P	D	M	P	G	G	E	A	A	M	V	E	L	L	G	R	N	L	Q	L	T	A	V	F	A	Y	N	D	N	M	A	A	G	A	L	T	A	L	K	D	N	G	I	A	I	P	L	H	L	S	I	I	G	F	D	D	I	P	I	A	R	Y	T	D	P	Q	L	T	T	V	R	Y	P	I	A	S	M	A
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		G	N	Y	S	Y	E	Q	G	K	A	L	A	E	R	L	L	E	.	.	R	G	A	T	S	A	V	V	S	H	D	T	V	A	V	G	L	L	S	A	M	M	D	K	G	V	K	V	P	E	D	F	E	I	I	S	G	A	N	S	P	I	T	Q	Y	T	Y	P	T	L	T	S	V	N	Q	P	L	Y	D	L	G
Template Known Secondary structure		S			S						T	T							.	.	T	T		S					S	S															T			T	T	T	T						S	S			G	G	G	G	G		S	S
Template Predicted Secondary structure																			.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	A	T	E	L	A	L	Q	G	A	A	G	N	I	D	P	R	A	S	H	C	F	M	P	T	L	V	R	R	H	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	A	M	R	L	L	T	K	L	M	L	K	E	D	V	E	Q	N	Q	L	V	L	D	H	E	I	F	S	R	R	S	T
Template Known Secondary structure													T	T				S														T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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