Job Description Q46802 Confidence 99.05% Date Wed Jan 25 15:21:12 GMT 2012 Rank 65 Aligned Residues 202 % Identity 19% Template c3u5zM_ PDB info PDB header:dna binding protein/dna Chain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog Resolution 3.50 Å

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		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	A	P	D	E	P	H	I	E	Q	L	V	G	E	C	R	V	M	R	Q	L	K	R	L	I	S	R	I	A	P	S	P	S	S	V	M	V	V	G	E	S	G	T	G	K	E	V	V	A	R	A	I	H	K	L	S	G	R	R	N	K	P	F	I	A	I	N	C	A	A	I	P	E	Q	L	L	E	S	E
Query Conservation
Alig confidence																														.																												.	.	.
Template Conservation																														.																												.	.	.
Template Sequence		E	Q	K	Y	R	P	S	T	I	D	E	C	I	L	P	A	F	D	K	E	T	F	K	S	I	T	S	K	.	G	K	I	P	H	I	I	L	H	S	P	S	P	G	T	G	K	T	T	V	A	K	A	L	C	H	D	.	.	.	V	N	A	D	M	M	F	V	N	G	S	D	C	K	I	D	F	V	R	G	P
Template Known Secondary structure		T	T	T	S			S	S	T	T	T	S																	.	S	S									S	S	S		S	S												.	.	.	T	T								G	G	G								T
Template Predicted Secondary structure																														.																												.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	G	Y	V	K	G	A	F	T	G	A	S	A	N	G	K	T	G	L	I	Q	A	A	N	T	G	T	L	F	L	D	E	I	G	D	M	P	L	M	L	Q	A	K	L	L	R	A	I	E	A	R	E	I	L	P	I	G	A	S	S	P	I	Q	V	D	I	R	I	I	S	A	T	N	Q	N	L	A	Q	F
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Sequence		L	T	N	F	A	S	A	A	S	F	D	G	R	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	V	I	V	I	D	E	F	D	R	S	G	L	A	E	S	Q	R	H	L	R	S	F	M	E	.	.	.	.	.	.	.	.	.	.	A	Y	S	S	N	C	S	I	I	I	T	A	N	N	.	.	.	.	.
Template Known Secondary structure								S			T	T					.	.	.	.	.	.	.	.	.	.	.	.						S				G	G	G													.	.	.	.	.	.	.	.	.	.		T	T	T	T								S		.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.													.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.											.	.	.	130	.	.	.	.	.	.	.	.	.	140
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	E	G	K	F	R	E	D	L	F	Y	R	L	N	V	I	P	I	T	L	P	P	L	R	E	R	Q	E	D	I	E	L	L	V	H	Y	F	L	H	L	H	T	R	R	L	G	S	V	Y	P	G	I	A	P	D	V	V	E	I	L	R	K	H	R	W	P	G	N	L	R	E	L	S	N	L	M	E	Y
Query Conservation
Alig confidence		.	.																						.	.	.	.
Template Conservation		.	.																						.	.	.	.
Template Sequence		.	.	I	D	G	I	I	K	P	L	Q	S	R	C	R	V	I	T	F	G	Q	P	T	.	.	.	.	D	E	D	K	I	E	M	M	K	Q	M	I	R	R	L	T	E	I	C	K	H	E	G	I	A	I	A	D	M	K	V	V	A	A	L	V	K	K	N	F	P	D	F	R	K	T	I	G	E	L	D	S
Template Known Secondary structure		.	.	G	G	G	S								S					T	T				.	.	.	.																							T				S		S										T		S
Template Predicted Secondary structure		.	.																						.	.	.	.
Template SS confidence
				141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.					.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions