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Job DescriptionQ46802
Confidence99.87%DateWed Jan 25 15:21:12 GMT 2012
Rank7Aligned Residues253
% Identity15%Templatec3pfiB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:holliday junction atp-dependent dna helicase ruvb; PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate
Resolution2.69 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   267..270...... ...280.........290.........300.........310.........320.........330.........340...
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Query Sequence  PHIEQLVGEC. . . RVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFG
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Template Sequence  SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE. . . XSANIKTTAAPXIEKSGDLAAIL.
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STT

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SSTTSS...TT

GGG

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   23......30.........40.........50.........60.........70..... ....80.........90........
 
   344.....350.........360.........370.........380.........390.........400.........410.........420...
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Query Sequence  YVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAE
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Template Sequence  . . . . . . . . . . . . . . . . . TNLSEGDILFIDEIHRLSPAIEEVLYPAXED. . . . . . . . . . . . YPKFTLIGATTR. . . . . . . A
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TT
SGGG

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   99100.........110.........120......... 130.........140. .
 
   424.....430.........440.........450.........460.........470.........480.........490.........500...
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Query Sequence  GKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNV
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Template Sequence  GXLSNPLRDRFGXQFRLEFY. . . KDSELALILQKAALKLN. . . . . . . KTCEEKAALEIAKR. SRSTPRIALRLLKRVRDF
Template Known Secondary structure  GGS
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   162.......170.........180. ........190........ .200.........210.. .......220.........230
 
   504. ....510.........520.........530.........540.........550.........560... ......570.........580
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Query Sequence  VP. . SGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRH. NSKKQVADELGIGIATL
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Template Sequence  ADVNDEEIITEKRANEALNSLGVNELGF. . . . . . . . . . . . . . . . . DAXDLRYLELLTAAKQKPIGLASIAAALSEDENTI
Template Known Secondary structure  TT
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TT

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   231........240.........250........ .260.........270.........280.........290...
 
   581......
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Query Sequence  YRKIKKY
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Template Conservation         
Template Sequence  EDVIEPY
Template Known Secondary structure  TT
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   294.....300
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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