Job Description Q46802 Confidence 98.30% Date Wed Jan 25 15:21:12 GMT 2012 Rank 129 Aligned Residues 154 % Identity 12% Template c3k2nB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:sigma-54-dependent transcriptional regulator; PDBTitle: the crystal structure of sigma-54-dependent transcriptional2 regulator domain from chlorobium tepidum tls Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.							.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																.	.	.												.	.	.	.	.	.
Query SS confidence																																.	.	.												.	.	.	.	.	.
Query Sequence		E	L	A	T	T	Q	S	V	L	M	Q	I	Q	P	T	I	Q	R	F	A	R	M	L	A	S	V	L	Q	L	E	.	.	.	V	E	I	V	D	E	N	L	C	R	V	.	.	.	.	.	.	A	G	T	G	A	Y	G	K	F	L	G	R	Q	L	S	G	N	S	R	L	L	R	H	V	L	E	T	K	T	E
Query Conservation																																.	.	.												.	.	.	.	.	.
Alig confidence																																.	.	.												.	.	.	.	.	.
Template Conservation
Template Sequence		Y	I	G	D	A	I	G	T	I	R	D	P	Q	E	L	F	R	T	V	T	D	K	L	R	L	L	F	A	F	D	S	A	V	I	I	T	I	D	R	E	R	R	E	A	S	V	F	F	E	X	L	R	F	E	L	P	E	Q	L	R	H	Q	T	R	S	I	A	G	T	W	L	E	G	H	L	D	D	R	T	V
Template Known Secondary structure																									T	T	T				S									T	T	T	T										S	S				G	G	G			S					T	T	S	T	T	G	G	G	T	T			S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.						.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.
Query SS confidence																.	.	.	.	.
Query Sequence		K	V	V	T	Q	S	R	F	D	P	L	C	E	G	.	.	.	.	.	C	D	S	K	E	N	C	R	E	K	A	F	L	G	T	P	V	I	L	Q	D	R	C	V	G	V	I	S	L	I	A	V	T	H	E	Q	Q	E	H	I	S	D	N	L	R	E	F	S	D	Y	V	R	H	I	S	T	I	F	V	S	K
Query Conservation																.	.	.	.	.
Alig confidence																.	.	.	.	.																																					.	.
Template Conservation																																																									.	.
Template Sequence		T	V	A	S	I	A	R	D	I	P	S	F	G	A	D	G	A	P	L	L	W	T	L	H	E	L	G	X	R	Q	I	V	L	S	P	L	R	S	G	G	R	V	I	G	F	L	S	F	V	S	A	E	E	K	L	.	.	W	S	D	G	D	K	S	L	L	S	G	V	S	S	S	I	A	I	A	V	S	N	A
Template Known Secondary structure						T	T	T	S		T	T	T	T	S	T	T										T	T												T	T											S	S				.	.
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		148	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	E	D	Q	G	P	G	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	Y	E	E	L	R	Q	R	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions