Job Description Q46802 Confidence 99.21% Date Wed Jan 25 15:21:12 GMT 2012 Rank 51 Aligned Residues 200 % Identity 19% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

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		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.											.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.
Query Sequence		H	I	E	Q	L	V	G	E	C	R	V	M	R	Q	L	K	R	L	I	.	.	.	.	.	.	.	.	.	.	S	R	I	A	P	S	P	S	S	V	M	V	V	G	E	S	G	T	G	K	E	V	V	A	R	A	I	H	K	L	S	G	R	R	N	K	P	F	I	A	I	N	C	A	A	I	P	E	Q	L	L
Query Conservation																					.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.																															.	.	.															.	.	.	.
Template Conservation																																																													.	.	.															.	.	.	.
Template Sequence		K	W	E	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	V	K	F	P	H	L	F	K	G	N	R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	.	.	.	A	N	S	T	F	F	S	V	S	S	S	D	L	V	.	.	.	.
Template Known Secondary structure			S	T	T	S		S													T						G	G	G			T	T												S	T	T	S												T	.	.	.	T	T												T	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.															.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.												.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	E	L	F	G	Y	V	K	G	A	F	T	G	A	S	A	N	G	K	T	G	L	I	Q	A	A	N	T	G	T	L	F	L	D	E	I	G	D	M	.	.	.	.	.	.	.	.	.	.	.	P	L	M	L	Q	A	K	L	L	R	A	I	E	A	R	E	I	L	P	I	G	A	S	S	P	I	Q	V	D
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	S	K	W	M	G	E	S	E	K	L	V	K	Q	L	F	A	M	A	R	E	N	K	P	S	I	I	F	I	D	Q	V	D	A	L	T	G	T	R	G	E	G	E	S	E	A	S	R	R	I	K	T	E	L	L	V	Q	M	N	.	.	.	.	.	.	.	.	G	V	G	N	D	S	Q	G
Template Known Secondary structure		.	.	.	.	.	.	T	T	S	S	S	S		T	T	T										T	T	S	S							S	G	G	G	G					S	S	S	S	S	S	S	S	S	T	T								T	T	.	.	.	.	.	.	.	.	S	T	T	T	T	S		S
Template Predicted Secondary structure		.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.
Template SS confidence
								204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.									.	.	.	.	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.		.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.					.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure																																.																						.	.	.	.
Query SS confidence																																.																						.	.	.	.
Query Sequence		I	R	I	I	S	A	T	N	Q	N	L	A	Q	F	I	A	E	G	K	F	R	E	D	L	F	Y	R	L	N	V	.	I	P	I	T	L	P	P	L	R	E	R	Q	E	D	I	E	L	L	V	H	Y	.	.	.	.	F	L	H	L	H	T	R	R	L	G	S	V	Y	P	G	I	A	P	D	V	V	E	I	L
Query Conservation																																.																						.	.	.	.
Alig confidence												.	.	.	.	.	.	.														.																						.	.	.	.
Template Conservation												.	.	.	.	.	.	.
Template Sequence		V	L	V	L	G	A	T	N	I	P	.	.	.	.	.	.	.	W	Q	L	D	S	A	I	R	R	R	F	E	R	R	I	Y	I	P	L	P	D	L	A	A	R	T	T	M	F	E	I	N	V	G	D	T	P	C	V	L	T	K	E	D	Y	R	T	L	G	A	M	T	E	G	Y	S	G	S	D	I	A	V	V
Template Known Secondary structure									S			.	.	.	.	.	.	.	T	T	S																															T	T	S															T		T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.								280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	H	R	W	P	G	N	L	R	E	L	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	D	A	L	M	Q	P	I	R	K	I	Q	S
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions