Job Description Q46802 Confidence 99.01% Date Wed Jan 25 15:21:12 GMT 2012 Rank 73 Aligned Residues 227 % Identity 22% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.												.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	H	I	E	Q	L	V	G	E	C	R	V	M	R	Q	L	K	R	L	I	S	R	.	.	.	.	.	.	.	.	.	.	.	I	A	P	S	P	S	S	V	M	V	V	G	E	S	G	T	G	K	E	V	V	A	R	A	I	H	K	L	S	G	R	R	N	K	P	F	I	A	I	N	C	A	A	I	P	E
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation																																																																.	.	.
Template Sequence		Q	V	T	W	E	D	I	G	G	L	E	D	V	K	R	E	L	Q	E	L	V	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	.	.	.	C	Q	A	N	F	I	S	I	K	G	P	E	L	L	T
Template Known Secondary structure					T	T	T	T		S																								T	S						S								T	T	S													.	.	.	T	T
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.				.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.				.	.	.	.	370	.	.	.	.	.	.	.	.	.	380															.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	L	E	S	E	L	F	G	Y	V	K	G	A	F	T	G	A	S	A	N	G	K	T	G	L	I	Q	A	A	N	.	.	.	T	G	T	L	F	L	D	E	I	G	D	M	P	L	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	A	K	L	L	R	A	I	E	A	R	E	I	L	P	I
Query Conservation																																	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.
Template Sequence		M	W	F	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	.	.	.	.	.	.
Template Known Secondary structure				T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		T							T	T	T	T	T	T	T		S						S	S	G	G	G	G					T	T	T	T		S	S			S														S	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.
Template SS confidence
		550	.	.														.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.			.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		G	A	S	S	P	I	Q	V	D	I	R	I	I	S	A	T	N	Q	N	L	A	Q	F	I	A	E	G	K	F	R	E	D	L	F	Y	.	.	R	L	N	V	I	P	I	T	L	P	P	L	R	E	R	Q	E	D	I	E	L	L	V	H	Y	F	L	H	L	H	T	R	R	L	G	S	V	Y	P	G	I	A	P
Query Conservation																																					.	.
Alig confidence		.	.	.																.	.	.	.	.	.	.											.	.						.									.	.																.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																.	.	.	.	.	.	.																		.									.	.																.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	.	.	.	.	.	.	.	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	.	I	Y	I	P	L	P	D	E	.	.	K	S	R	V	A	I	L	K	A	N	L	R	K	S	P	.	.	.	.	.	.	.	.	.	V	A	K
Template Known Secondary structure		.	.	.	S		T	T	S	S								S		.	.	.	.	.	.	.	G	G	G			G	G	G	T	S	T	T	T	S				.								T	.	.	T										T	T	T	S		.	.	.	.	.	.	.	.	.	B		S
Template Predicted Secondary structure		.	.	.																.	.	.	.	.	.	.																		.									.	.																.	.	.	.	.	.	.	.	.
Template SS confidence
					611	.	.	.	.	.	.	.	.	620	.	.	.	.	.								.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.		.	.	.	.	.	.	.	650			.	.	.	.	.	.	.	.	.	660	.	.	.	.	.										.	.	.
		476	.		.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.								.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure				.																												.	.	.	.	.	.	.
Query SS confidence				.																												.	.	.	.	.	.	.
Query Sequence		D	V	.	V	E	I	L	R	K	H	R	W	P	G	N	L	R	E	L	S	N	L	M	E	Y	L	V	N	V	V	.	.	.	.	.	.	.	P	S	G	E	V	I	D	S	T	L	L	P	P	N	L	L	N	N	G	T	T	E	Q	S	D	V	T	E	V	S	E	A	H	L	S	L	D	D	A	G	G	T	A
Query Conservation				.																												.	.	.	.	.	.	.
Alig confidence				.																												.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	D	L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A	I	R	E	S	I	E	S	E	I	V	P	E	I	R	R	D	H	F	E	E	A	M	R	F	A	R	R	S	V	S	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D
Template Known Secondary structure		S							T	T	T		S	S															T	T														B										T	T				S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		669	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730																		.
		548	.	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	E	M	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	K	Y	E	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		752	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions