Job Description Q46802 Confidence 97.55% Date Wed Jan 25 15:21:12 GMT 2012 Rank 169 Aligned Residues 160 % Identity 8% Template c3c2wB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of the photosensory core domain of p.2 aeruginosa bacteriophytochrome pabphp in the pfr state Resolution 2.90 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.						.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																										.	.	.	.	.								.	.																					.	.
Query SS confidence																										.	.	.	.	.								.	.																					.	.
Query Sequence		Q	I	Q	P	T	I	Q	R	F	A	R	M	L	A	S	V	L	Q	L	E	V	E	I	V	.	.	.	.	.	D	E	N	L	C	R	V	.	.	A	G	T	G	A	Y	G	K	F	L	G	R	Q	L	S	G	N	S	R	L	.	.	L	R	H	V	L	E	T	K	T	E	K	V	V	T	Q	S	R	F	D	P
Query Conservation																										.	.	.	.	.								.	.																					.	.
Alig confidence																										.	.	.	.	.								.	.																					.	.
Template Conservation
Template Sequence		D	T	A	S	L	L	S	N	V	T	D	E	L	R	R	M	T	G	Y	D	R	V	M	A	Y	R	F	R	H	D	D	S	G	E	V	V	A	E	S	R	R	E	D	L	E	S	Y	L	G	Q	R	Y	P	A	S	D	I	P	A	Q	A	R	R	L	Y	I	Q	N	P	I	R	L	I	A	D	V	A	Y	T	P
Template Known Secondary structure																					S									T	T	S											T	T	S				T	T		B			G	G	G	S												S					S		S	S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		83	.	.	.																										.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	C	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	D	S	K	E	N	C	R	E	K	A	F	L	G	T	P	V	I	L	Q	D	R	C	V	G	V	I	S	L	I	A	V	T	H	E	Q	Q	E	H	I	S	D	N	L	R	E	F	S	D	Y	V
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	R	V	F	P	A	L	N	P	E	T	N	E	S	F	D	L	S	Y	S	V	L	R	S	V	S	P	I	H	C	E	Y	L	T	N	M	G	V	R	A	S	M	S	I	S	I	V	V	G	G	K	L	W	G	L	F	S	C	H	H	M	S	P	K	L	I	P	Y	P	V	R	M	S	F	Q	I	F	S	Q	V
Template Known Secondary structure						S	S	B		T	T	T	S	S	B				T	T		S	S	B														T												T	T											S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	I	S	T	I	F	V	S	K	L	L	E	D	Q	G	P	G	D	N	I	S	K	I	F	A	T	M	I	D	N	M	D	Q	G
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		C	S	.	A	I	V	E	R	L	E	Q	G	R	I	A	E	L	L	R	V	S	T	E	R	R	L	A	L	A	R	R	A	R	D	A
Template Known Secondary structure				.																												S	T	T	T	S
Template Predicted Secondary structure				.
Template SS confidence
		299	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions