Job Description Q46802 Confidence 99.61% Date Wed Jan 25 15:21:12 GMT 2012 Rank 25 Aligned Residues 217 % Identity 14% Template c3bosA_ PDB info PDB header:hydrolase regulator,dna binding protein Chain: A: PDB Molecule:putative dna replication factor; PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		262	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		N	A	P	D	E	P	H	I	E	Q	.	L	V	G	E	C	R	V	M	R	Q	L	K	R	L	I	S	R	I	A	P	S	P	S	S	V	M	V	V	G	E	S	G	T	G	K	E	V	V	A	R	A	I	H	K	L	S	G	R	R	N	K	P	F	I	A	I	N	C	A	A	I	P	E	Q	L	L	E	S	E
Query Conservation												.
Alig confidence												.																	.	.
Template Conservation																													.	.
Template Sequence		H	L	P	D	D	E	T	F	T	S	Y	Y	P	G	N	D	E	L	I	G	A	L	K	S	A	A	S	.	.	G	D	G	V	Q	A	I	Y	L	W	G	P	V	K	S	G	R	T	H	L	I	H	A	A	C	A	R	A	N	E	L	E	R	R	S	F	Y	I	P	L	G	I	H	A	S	I	S	T	A	L	L
Template Known Secondary structure					T	T		S	T	T	T	S																	.	.	T		S		S							S	T	T	S	S															T	T								G	G	G	G	G	G	S		G	G	G	G
Template Predicted Secondary structure																													.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	G	Y	V	K	G	A	F	T	G	A	S	A	N	G	K	T	G	L	I	Q	A	A	N	T	G	T	L	F	L	D	E	I	G	D	M	P	L	M	L	Q	A	K	L	L	R	A	I	E	A	R	E	I	L	P	I	G	A	S	S	P	I	Q	V	D	I	R	I	I	S	A	T	N	Q	N	L	A	Q	F
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		E	G	L	E	Q	F	D	L	I	C	I	D	D	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	A	G	H	P	L	W	E	E	A	I	F	D	L	Y	N	R	V	A	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	G	S	L	I	V	S	A	S	A	S	P	X	E	.
Template Known Secondary structure		T	T	G	G	G	S	S						T	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	T																			.	.	.	.	.	.	.	.	.	.	.	.	.		S								S	S		T	T	T	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.															.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.														.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		I	A	E	G	K	F	R	E	D	L	F	Y	R	L	N	.	V	I	P	I	T	L	P	P	L	R	E	R	Q	E	D	I	E	L	L	V	H	Y	F	L	H	L	H	T	R	R	L	G	S	V	Y	P	G	I	A	P	D	V	V	E	I	L	R	K	H	R	W	P	G	N	L	R	E	L	S	N	L	M	E	Y
Query Conservation																	.
Alig confidence		.	.														.											.	.																	.	.	.	.	.	.	.															.
Template Conservation		.	.																									.	.																	.	.	.	.	.	.	.															.
Template Sequence		.	.	A	G	F	V	L	P	D	L	V	S	R	X	H	W	G	L	T	Y	Q	L	Q	P	X	X	.	.	D	D	E	K	L	A	A	L	Q	R	R	A	A	X	R	G	.	.	.	.	.	.	.	L	Q	L	P	E	D	V	G	R	F	L	L	N	R	.	X	A	R	D	L	R	T	L	F	D	V	L	D	R
Template Known Secondary structure		.	.	T	T													S										.	.	G	G	G												T	T	.	.	.	.	.	.	.															.	T	T	T
Template Predicted Secondary structure		.	.																									.	.																	.	.	.	.	.	.	.															.
Template SS confidence
				151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190								.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.
		500	.	.	.	.	.		.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		L	V	N	V	V	P	.	S	G	E	V	I	D	S	T	L	L	P	P	N	L	L
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		L	D	K	A	S	X	V	H	Q	R	K	L	T	I	P	F	V	K	E	X	L	R
Template Known Secondary structure										T													T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions