Job Description Q46802 Confidence 98.89% Date Wed Jan 25 15:21:12 GMT 2012 Rank 86 Aligned Residues 193 % Identity 23% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

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		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.											.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	H	I	E	Q	L	V	G	E	C	R	V	M	R	Q	L	K	R	L	I	.	.	.	.	.	.	.	.	.	.	S	R	I	A	P	S	P	S	S	V	M	V	V	G	E	S	G	T	G	K	E	V	V	A	R	A	I	H	K	L	S	G	R	R	N	K	P	F	I	A	I	N	C	A	A	I	P	E	Q
Query Conservation																							.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.																															.	.	.															.	.
Template Conservation																																																															.	.	.															.	.
Template Sequence		N	V	K	W	S	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	.	.	.	A	N	N	S	T	F	F	S	I	S	S	S	D	L	.	.
Template Known Secondary structure					G	G	G	S		S												T							G	G	G	S		S	S					S							S	T	T	S													.	.	.	T	T	T									S	T	T	.	.
Template Predicted Secondary structure																																																															.	.	.															.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.				.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																															.	.	.														.	.
Query SS confidence																															.	.	.														.	.
Query Sequence		L	L	E	S	E	L	F	G	Y	V	K	G	A	F	T	G	A	S	A	N	G	K	T	G	L	I	Q	A	A	.	.	.	N	T	G	T	L	F	L	D	E	I	G	D	M	.	.	P	L	M	L	Q	A	K	L	L	R	A	I	E	A	R	E	I	L	P	I	G	A	S	S	P	I	Q	V	D	I	R	I	I
Query Conservation																															.	.	.														.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.														.	.														.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	S	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	.	.	.	.	.	.	.	.	G	V	G	V	D	N	D	G	I	L	V	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T				T												T		S							S																				.	.	.	.	.	.	.	.	T	S	S	S			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template SS confidence
																	205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.									250	.	.	.	.	.	.	.	.	.	260	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		S	A	T	N	Q	N	L	A	Q	F	I	A	E	G	K	F	R	E	D	L	F	Y	R	L	N	.	V	I	P	I	T	L	P	P	L	R	E	R	Q	E	D	I	E	L	L	V	H	Y	F	L	H	L	H	T	R	R	L	G	S	V	Y	P	G	I	A	P	D	V	V	E	I	L	R	K	H	R	W	P	G	N
Query Conservation																											.
Alig confidence							.	.	.	.	.	.	.														.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	T	N	I	.	.	.	.	.	.	.	P	W	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	A	H	A	R	A	A	M	F	R	L	H	L	.	.	.	.	.	.	.	.	.	.	.	G	S	T	Q	N	S	L	T	E	A	D	F	Q	E	L	G	R	K	T	D	G	Y	S
Template Known Secondary structure					S		.	.	.	.	.	.	.		T	T	S									S										S												.	.	.	.	.	.	.	.	.	.	.	T	T			B													S			S
Template Predicted Secondary structure							.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280								.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.												.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	E	L	S	N	L	M	E	Y	L	V	N	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	D	I	S	I	I	V	R	D	A	L	M	Q	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions