Job Description Q46802 Confidence 99.60% Date Wed Jan 25 15:21:12 GMT 2012 Rank 26 Aligned Residues 230 % Identity 12% Template c2z4rB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa Resolution 3.05 Å

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		262	.	.	.	.	.	.	.	270	.		.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320			.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure												.						.																																													.	.
Query SS confidence												.						.																																													.	.
Query Sequence		N	A	P	D	E	P	H	I	E	Q	.	L	V	G	E	C	.	R	V	M	R	Q	L	K	R	L	I	S	R	I	A	P	S	P	S	S	V	M	V	V	G	E	S	G	T	G	K	E	V	V	A	R	A	I	H	K	L	S	G	R	R	.	.	N	K	P	F	I	A	I	N	C	A	A	I	P	E	Q	L	L
Query Conservation												.						.																																													.	.
Alig confidence												.						.																																													.	.
Template Conservation
Template Sequence		P	L	N	P	D	Y	T	F	E	N	F	V	V	G	P	G	N	S	F	A	Y	H	A	A	L	E	V	A	K	H	P	G	R	Y	N	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	V	Q	N	E	P	D	L	R	V	M	Y	I	T	S	E	K	F	L	N	D	L	V
Template Known Secondary structure					S	S		S	G	G	G					T	T	T													S	T	T	T	S								S	S	S	S	S																S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	E	L	F	G	Y	V	K	G	A	F	T	G	A	S	A	N	G	K	T	G	L	I	Q	A	A	N	T	G	T	L	F	L	D	E	I	G	D	M	P	L	M	L	Q	A	K	L	L	R	A	I	E	A	R	E	I	L	P	I	G	A	S	S	P	I	Q	V	D	I	R	I	I	S	A	T	N	Q	N	L
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Sequence		D	S	M	K	E	G	K	L	.	.	.	.	.	.	.	.	.	.	N	E	F	R	E	K	Y	R	K	K	V	D	I	L	L	I	D	D	V	Q	F	L	I	G	K	T	G	V	Q	T	E	L	F	H	T	.	.	.	.	.	.	.	.	F	N	E	L	H	D	S	G	K	Q	I	V	I	C	S	D	R	E	P
Template Known Secondary structure						T	S			.	.	.	.	.	.	.	.	.	.								T	T	T		S							G	G	G	G	T	T												.	.	.	.	.	.	.	.						T	T	T								S	S		T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.											.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.									220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	F	I	A	E	G	K	F	R	E	D	L	F	Y	R	L	N	V	I	P	I	T	L	P	P	L	R	E	R	Q	E	D	I	E	L	L	V	H	Y	F	L	H	L	H	T	R	R	L	G	S	V	Y	P	G	I	A	P	D	V	V	E	I	L	R	K	H	R	W	P	G	N	L	R	E	L	S	N	L	M
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		Q	K	L	S	E	F	Q	D	R	L	V	S	R	F	Q	M	G	L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	I	A	R	K	M	L	E	I	E	.	.	.	.	.	.	.	.	.	.	.	H	G	E	L	P	E	E	V	L	N	F	V	A	E	N	.	V	D	D	N	L	R	R	L	R	G	A	I
Template Known Secondary structure		T	T		S	S											S	S																									.	.	.	.	.	.	.	.	.	.	.	T					T	T									.			S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.												280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.
		498	.	500	.	.	.		.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		E	Y	L	V	N	V	.	V	P	S	G	E	V	I	D	S	T	L	L	P	P	N	L	L	N
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		I	K	L	L	V	Y	K	E	T	T	G	K	E	V	D	L	K	E	A	I	L	L	L	K	D
Template Known Secondary structure											S	S	S											T	G	G
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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