Job Description Q46802 Confidence 98.82% Date Wed Jan 25 15:21:12 GMT 2012 Rank 90 Aligned Residues 217 % Identity 12% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.												.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	G	E	C	R	V	M	R	Q	L	K	R	L	I	S	R	I	A	P	S	.	.	.	.	.	.	.	.	.	.	.	P	S	S	V	M	V	V	G	E	S	G	T	G	K	E	V	V	A	R	A	I	H	K	L	S	G	R	R	N	K	P	F	I	A	I	N	C	A	A	I	P	E	Q	L	L	E	S	E
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																																																										.	.	.
Template Sequence		I	G	A	L	E	D	I	R	E	E	L	T	M	A	I	L	A	P	V	R	N	P	D	Q	F	K	A	L	G	L	V	T	P	A	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	E	.	.	.	S	G	L	N	F	I	S	V	K	G	P	E	L	L	N	M	Y	V	G	E	S
Template Known Secondary structure																	T					S							T	T					S						S	S	T	T	S													.	.	.	T	T								T	T	T	T		S	S	T	T
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.				.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	G	Y	V	K	G	A	F	T	G	A	S	A	N	G	K	T	G	L	I	Q	A	A	N	T	G	T	L	F	L	D	E	I	G	D	M	P	L	M	L	Q	A	K	L	L	R	A	I	E	A	R	E	I	L	P	I	G	A	S	S	P	I	Q	V	D	I	R	I	I	S	A	T	N	Q	N	L	A	Q	F
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.																		.	.	.	.	.
Template Sequence		E	R	.	.	.	.	.	.	.	.	.	.	A	V	R	Q	V	F	Q	R	A	K	N	S	A	P	C	V	I	F	F	D	E	V	D	A	L	C	P	S	V	R	V	V	N	Q	L	L	T	E	M	.	.	.	.	.	.	.	D	G	L	E	A	R	Q	Q	V	F	I	M	A	A	T	N	R	.	.	.	.	.
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.												T		S							T		T	T	T				T	T										.	.	.	.	.	.	.		T			S	T	T									S		.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.																		.	.	.	.	.
Template SS confidence
		660	.											.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700								.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.		.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.		.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.																																																					.
Query SS confidence																		.																																																					.
Query Sequence		I	A	E	G	K	F	R	E	D	L	F	Y	R	L	N	V	.	I	P	I	T	L	P	P	L	R	E	R	Q	E	D	I	E	L	L	V	H	Y	F	L	H	L	H	T	R	R	L	G	S	V	Y	P	G	I	A	P	D	V	V	E	I	L	R	K	H	R	W	P	G	.	N	L	R	E	L	S	N	L	M	E
Query Conservation																		.																																																					.
Alig confidence		.	.															.											.	.															.	.	.	.																							.
Template Conservation		.	.																										.	.															.	.	.	.
Template Sequence		.	.	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	K	T	L	F	V	G	L	P	P	P	.	.	A	D	R	L	A	I	L	K	T	I	T	K	N	G	.	.	.	.	T	K	P	P	L	D	A	D	V	N	L	E	A	I	A	G	D	L	R	C	D	C	Y	T	G	A	D	L	S	A	L	V	R
Template Known Secondary structure		.	.	G	G	G	S						S	T	T	S	S								S				.	.											T	T	T	T	.	.	.	.	B	T	T	B	B		T	T								T		S	G	G	G	S
Template Predicted Secondary structure		.	.																										.	.															.	.	.	.
Template SS confidence
				727	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.			.	.	.	.	.	.	.	.	760	.	.	.	.	.					.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.
		499	500	.	.	.	.			.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		Y	L	V	N	V	V	.	.	P	S	G	E	V	I	D	S	T	L	L	P	P	N	L	L	N
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		E	A	S	I	C	A	L	R	Q	E	M	L	K	V	S	H	K	H	F	E	E	A	F	K	K
Template Known Secondary structure															B										T	T
Template Predicted Secondary structure
Template SS confidence
		799	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions